| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,074,053 – 11,074,159 |
| Length | 106 |
| Max. P | 0.677633 |
| Location | 11,074,053 – 11,074,159 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.92 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -18.83 |
| Energy contribution | -19.33 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11074053 106 + 23771897 CCUUA--AAUGACUUACCUUUCCUUGCCUUCCAGUUGAGGACAACGAGCUGCAGGGCAACCUCACGGCAUACAACUUUGCGCUGCGCGCCUACGAGCGCUUCCUCAGC .....--..........................((((((((......((((.(((....)))..))))..........(((((.((......))))))).)))))))) ( -30.90) >DroSec_CAF1 6823 105 + 1 CCAUA--AAUGACUAGCC-UUCCUUGCCUUCCAGUUGAGGACAACGAGCUGCAAGGCAACCUCACGGCAUACAACUUUGCGCUGCGCGCCUACGAGCGCUUCCUCAGC .....--..(((...(((-....(((((((.(((((..(.....).))))).)))))))......)))..........(((((.((......)))))))....))).. ( -28.30) >DroSim_CAF1 6664 96 + 1 CCAUA--AAUGACUAACC----------UUCCAGUUGAGGACAACGAGCUGCAAGGCAACCUUACGGCAUACAACUUUGCGCUGCGCGCCUACGAGCGCUUCCUCAGC .....--...........----------.....((((((((......((((.((((...)))).))))..........(((((.((......))))))).)))))))) ( -28.70) >DroWil_CAF1 6567 106 + 1 CAUUUCAAUUGCCCAUCUCUUUCU--AUUUGCAGUUGAGGACAAUGAAUUGCAGGGCACACUGACUGCCUAUAAUUUUGCCCUGCGCGCCUAUGAACGCUUCCUCUGC ....((((((((............--....))))))))(((.........((((((((...................))))))))(((........))).)))..... ( -27.10) >DroYak_CAF1 6650 98 + 1 UGUCU--AU-------CC-UACUCUGCCUUUUAGUUGAGGACAACGAGCUGCAAGGCAACCUCACGGCAUACAACUUUGCGCUACGAGCCUACGAGCGCUUCCUUAGC .....--..-------..-..............((((((((......((((..(((...)))..))))..........(((((.((......))))))).)))))))) ( -25.30) >DroMoj_CAF1 6428 104 + 1 CCUUU--AGU-AUUAUAU-UUUAUUGCUUUGCAGUGGAGGACAAUGAGCUGCAGGGCACUUUGACCGCCUACAAUUUCGCUCUGCGGGCAUAUGAGCGUUUCCUAAGC ..(((--((.-......(-((((((((...)))))))))(((......(((((((((...(((........)))....)))))))))((......)))))..))))). ( -24.60) >consensus CCUUA__AAUGACUAACC_UUCCUUGCCUUCCAGUUGAGGACAACGAGCUGCAAGGCAACCUCACGGCAUACAACUUUGCGCUGCGCGCCUACGAGCGCUUCCUCAGC .................................((((((((......((((..((.....))..))))..........(((((.((......))))))).)))))))) (-18.83 = -19.33 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:48 2006