| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,069,110 – 11,069,220 |
| Length | 110 |
| Max. P | 0.744333 |
| Location | 11,069,110 – 11,069,220 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.55 |
| Mean single sequence MFE | -17.89 |
| Consensus MFE | -5.10 |
| Energy contribution | -7.94 |
| Covariance contribution | 2.84 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11069110 110 + 23771897 CCUCCAACCCGCUGAUUUUCUCUUCUACCGAAACUUCAUGAUCAGCGACUUUUUCUGCCUCCUGAAUUUCCUGCUCUAUGGGAUUUUCUUGCUUCGCAUUUUCUUGAUCA .........((((((((.....(((....))).......))))))))........(((.....(((..((((.......))))..))).......)))............ ( -18.90) >DroSec_CAF1 1748 110 + 1 CCUCCAACCCGCUGACUUUCUCCUUUAACGGAACUUCCGUAUCAGCGACUUUUUCUGCCUCCUGAAUUUCCUGCUCCAUGCGAUUUUCUUUCUUCGGAUUUUCUUGAUCA .........((((((............((((.....)))).))))))............((..(((..(((.((.....))((.......))...)))..)))..))... ( -19.02) >DroSim_CAF1 1727 110 + 1 CCUCCAACCCGCUGACUUUCUCCUUUACCGGAACUUCCGGAUCAGCGACUUUUUCUGCCUCCUGAAUUUCCUGCUCCAUGGGAUUUUCUUUCUUCGGAUUUUCUUGAUCA ..(((....((((((............((((.....)))).))))))................(((..((((.......))))..))).......)))............ ( -22.62) >DroEre_CAF1 1751 96 + 1 CCUCCAAUCCUCCUAUUUUCUCCUCUACCGGAUCUUUCUGACCAACGACAUUUUCUGCCUCGUGUAUCUCCUGCUCUUUGGAAUAUUCUUUGUUCG-------------- ..(((((.....................((((....))))....((((...........))))..............)))))..............-------------- ( -8.70) >DroYak_CAF1 1733 96 + 1 CCUCCAACCCGCCGAUUUUCUCCUCUACCGGAUCUUUCUGAUCAGGGACAUUUCCUGUCUCCUGAAUCUCCAGCUCUCUGGGAUUUUCUUGCUUCG-------------- ..........((................((((....)))).(((((((((.....)))).)))))(((.((((....)))))))......))....-------------- ( -20.20) >consensus CCUCCAACCCGCUGAUUUUCUCCUCUACCGGAACUUCCUGAUCAGCGACUUUUUCUGCCUCCUGAAUUUCCUGCUCUAUGGGAUUUUCUUUCUUCG_AUUUUCUUGAUCA .........((((((((...(((......))).......))))))))................(((..((((.......))))..)))...................... ( -5.10 = -7.94 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:47 2006