Locus 3831

Sequence ID 3L_DroMel_CAF1
Location 11,068,490 – 11,068,584
Length 94
Max. P 0.965029
window5967

overview

Window 7

Location 11,068,490 – 11,068,584
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -26.37
Consensus MFE -19.08
Energy contribution -19.20
Covariance contribution 0.12
Combinations/Pair 1.27
Mean z-score -2.34
Structure conservation index 0.72
SVM decision value 1.58
SVM RNA-class probability 0.965029
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11068490 94 + 23771897
GCACAUCCUCUGUUGUCCCUUUUCGUGGGCACUCCUAUCCGACAUGCAUUUUGGAUUCUUAAGCAUCUGAUUGGGCUCACCCGGUUUUCGUUUU
((...........((((((.....).))))).....((((((........))))))......))....(((((((....)))))))........ ( -17.70)
>DroEre_CAF1 1095 94 + 1
GGAAAUCCCCGAUUGCCCCUUUUCGCGGGCACUUCUAUCCGACUUGUACUUCUGAUGGUUAAGCAUCAGAUUGUGCUCGCACGGAUUUCGUUUU
.(((((((..((.(((((........)))))..))....(((...((((.(((((((......)))))))..)))))))...)))))))..... ( -31.40)
>DroYak_CAF1 1095 94 + 1
ACAAAUCCUCGAUCGUACCUUUUCGUGGGCACUCCUGUCCGACUUGUACUUCUGAUGCUUAUGCAUCAGACUGUGCUCGUUCGGAUUUCGUUUU
.....(((.(((..........))).))).......(((((((..((((.((((((((....))))))))..))))..).))))))........ ( -30.00)
>consensus
GCAAAUCCUCGAUUGUCCCUUUUCGUGGGCACUCCUAUCCGACUUGUACUUCUGAUGCUUAAGCAUCAGAUUGUGCUCGCACGGAUUUCGUUUU
..............(((((.....).))))......(((((....((((.((((((((....))))))))..)))).....)))))........ (-19.08 = -19.20 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:46 2006