Locus 3828

Sequence ID 3L_DroMel_CAF1
Location 11,044,834 – 11,044,953
Length 119
Max. P 0.832175
window5962

overview

Window 2

Location 11,044,834 – 11,044,953
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.15
Mean single sequence MFE -38.48
Consensus MFE -32.86
Energy contribution -34.02
Covariance contribution 1.16
Combinations/Pair 1.03
Mean z-score -1.49
Structure conservation index 0.85
SVM decision value 0.72
SVM RNA-class probability 0.832175
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11044834 119 - 23771897
CCCACCAAA-UGGAGUACUCACCUUUCUCAGCACCUGUUUCUCCGGCUCCAAUGGCUGAACACUUGCCGUGGCCAGAUUGAGGUAACCGGUUGUGGCCUUCAGCCGGAUUGCUCCUCUCG
.........-.((((((...(((((..(((((....))).....((((...(((((.........))))))))).))..)))))..(((((((.......)))))))..))))))..... ( -37.90)
>DroSec_CAF1 1304 119 - 1
CCCACCAAA-UGGAGUACUCACCUUUCUCUGCACCUGUUUCUCCGGCUCCAAUGGCUGAACACUUGCCGUGGCCAGAUUGAGGUAACCGGUUGUGGCCUUCAGCCGGAUUGCUCCUCUCG
.........-.((((((...(((((..(((((....))......((((...(((((.........))))))))))))..)))))..(((((((.......)))))))..))))))..... ( -37.90)
>DroSim_CAF1 1341 119 - 1
CCCACCAAA-UGGAGUACUCACCUUUCUCUGCACCUGUUUCUCCGGCUCCAAUGGCUGAACACUUGCCGUGGCCAGAUUGAGGUAACCGGUUGUGGCCUUCAGCCGGAUUGCUCCUCUCG
.........-.((((((...(((((..(((((....))......((((...(((((.........))))))))))))..)))))..(((((((.......)))))))..))))))..... ( -37.90)
>DroEre_CAF1 1379 120 - 1
UCUACCAAUGCGGAGUACUCACCUUUCUCUGCACCUGUUUCUCCGGCUCCACUGGCUGAACACUUGCCGUGGCCAGCUUCAGGUAACCGGUUGUGGCCUUCAGCCGGAUACCUCCUCUCG
........(((((((...........)))))))...........((((((((.(((.........)))))))..))))..(((((.(((((((.......))))))).)))))....... ( -38.90)
>DroYak_CAF1 1507 120 - 1
UCUACCAAUUUGGAGUACUCACCUUUCGCUGCACCUGUUUCUCCGGCUCCACUGGCUGAACACUUGCCGUGGCCAGCUUGAGGUAACCGGUUGUGGCCUUCAGCCGGAUGCCUCCUCGCG
....((.....))............((((.(((..(((((..((((.....))))..)))))..))).))))...((..((((((.(((((((.......))))))).))))))...)). ( -39.80)
>consensus
CCCACCAAA_UGGAGUACUCACCUUUCUCUGCACCUGUUUCUCCGGCUCCAAUGGCUGAACACUUGCCGUGGCCAGAUUGAGGUAACCGGUUGUGGCCUUCAGCCGGAUUGCUCCUCUCG
...........((((((...(((((..(((((...........(((((.....)))))..(((.....)))).))))..)))))..(((((((.......)))))))..))))))..... (-32.86 = -34.02 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:40 2006