| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,040,332 – 11,040,449 |
| Length | 117 |
| Max. P | 0.915774 |
| Location | 11,040,332 – 11,040,449 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.19 |
| Mean single sequence MFE | -35.15 |
| Consensus MFE | -19.94 |
| Energy contribution | -20.37 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11040332 117 + 23771897 CAUCAAUUCGACAAGUCACUGCCACUUGUCGCACCGGAGCAAUACAAACACAAUCUGAAUCUCUGGUUGGCCUCAAAGAACAGCCAGAGCACAAUAAGCGGC---UCAGAUGUGUGCUCU ........((((((((.......))))))))....(((((.......(((((.(((((..(((((((((..(.....)..))))))))((.......)))..---))))))))))))))) ( -39.61) >DroSim_CAF1 1330 117 + 1 CAUCAAUUCGACAAGUUGCUGCCUCUUGUCGCACCGGAGCAAUACAAACACAAUCUGAAUCUCUGGUUGGCCUCAAAAAACAGCCAGAGCACAAUAAGCGGC---UCAGAGGUUUGCUCU ........(((((((.........)))))))....(((((((.((........(((((..(((((((((...........))))))))((.......)))..---))))).))))))))) ( -34.80) >DroEre_CAF1 1448 117 + 1 CAUCAAUUCGACAAGACCCUGCCACUUGUCGCACCGGAGCAAUACAAGCACAAUCUGAAUCUCUGGUUGGCCUCUAAAAACAGCCAGAGCACAUUAAGUGGC---UCAGAGGUGUGCUCU ..((....(((((((.........))))))).....))........((((((.(((((..(((((((((...........)))))))))(((.....)))..---)))))..)))))).. ( -37.90) >DroYak_CAF1 1372 117 + 1 CAUCAAUUCGACAAGACGCUGCCCUUUGUCGCACCGGAGCAAUAUAAGCACAAUCUGAACCUCUGGUUGUCCUCCAAAAACAGCCAGAGCACACUAAGUGGC---UCAGAGGUGUGCUCA ..((....(((((((.........))))))).....))........((((((.(((((..((((((((((.........))))))))))(((.....)))..---)))))..)))))).. ( -36.20) >DroMoj_CAF1 946 117 + 1 CAUCAGUUCGAUUCAUGCCUGCCUCUUGUCACGGCCGAGCAAUACAAGAGGAACGUCUCUCUGUGGCUGGGCGAGAACAAUAGUAACAGCACAAUAAGUGAC---UCAACUGGAGGUUCA ..((((((.((.((((...(((.(((((((.((((((.........(((((......))))).)))))))))))))((....))....)))......)))).---))))))))....... ( -31.80) >DroAna_CAF1 934 120 + 1 CAUCAGUUCGAUACGACCCUGCCACUCGUCACAGUCGAGCAAUACAAGAACAAUCUCAACCUGUGGCUGGCAUCGCAAAAUAGCCAGAGCACGCUUAGCGGCUCCUCAGAUGUCUGUUCC .....(((((((((((.........))))....))))))).......(((((..(((......((((((...........))))))((((.(((...)))))))....)).)..))))). ( -30.60) >consensus CAUCAAUUCGACAAGACCCUGCCACUUGUCGCACCGGAGCAAUACAAGCACAAUCUGAAUCUCUGGUUGGCCUCAAAAAACAGCCAGAGCACAAUAAGCGGC___UCAGAGGUGUGCUCU .........((((((.........))))))......(((((.(((...............(((((((((...........)))))))))..((.....))...........)))))))). (-19.94 = -20.37 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:35 2006