Locus 3824

Sequence ID 3L_DroMel_CAF1
Location 11,034,321 – 11,034,430
Length 109
Max. P 0.857991
window5956

overview

Window 6

Location 11,034,321 – 11,034,430
Length 109
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 74.86
Mean single sequence MFE -25.20
Consensus MFE -10.94
Energy contribution -11.08
Covariance contribution 0.14
Combinations/Pair 1.25
Mean z-score -2.17
Structure conservation index 0.43
SVM decision value 0.82
SVM RNA-class probability 0.857991
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11034321 109 - 23771897
UUCUGGGGAAUCUACUAUACGAUACCAACGUAUCAUAAUCCCACGGGGAUUCUAUUCUCGCCGGGUAGGUUC---CAGAGUUUUUAUACAUAUGUACUAUUAAACUAU--UUUC
......((((((((((....(((((....))))).........(((.((........)).))))))))))))---)..(((((...(((....))).....)))))..--.... ( -27.90)
>DroSec_CAF1 2824 104 - 1
UUCUGGGGAAUCUACUAUACGAUACCAACGUAUCAUAAUCCCACGGGGAUUCUAUUCUCGCCAGGUAGGUUC---CUGAGUAUUU-----UAUGUACUUUUAAACUAU--UUUC
.....(((((((((((....(((((....)))))..((((((...))))))............)))))))))---))((((((..-----...)))))).........--.... ( -28.50)
>DroSim_CAF1 2821 104 - 1
UUCUGGGGAAUCUACUAUACGAUACCAACGUAUCAUAAUCCCACGGGGAUUCUAUUCUCGCCAGGUAGGUUC---CAGAGUAUUU-----UAUGUACUUUUAAACUAU--UUUU
...(((((((((((((....(((((....)))))..((((((...))))))............)))))))))---)(((((((..-----...)))))))....))).--.... ( -28.70)
>DroWil_CAF1 19004 99 - 1
UUCUGGGGCAUCUAUUAUACCAUACCCACCUAUCAUAAUCCUACGGGUAUUCUCUUUUCGCCAGGUGGGUGC---CAUGGAAG------------AGAUUUAGAUUGAUUUCUG
.(((..(((((((((......((((((.................))))))........(....)))))))))---)..)))((------------(((((......))))))). ( -23.53)
>DroYak_CAF1 2901 104 - 1
UUCUGGGGAAUCUACUACACUAUACCAACUUAUCAUAACCCCACGGGAAUUCUAUUCUCGCCAGGUAAGUUC---CAGAAUAUGU-----UAUGUACUUUACACAUAU--UUUC
((((((((................))((((((((.........(((((((...)))))))...)))))))))---))))).....-----(((((.......))))).--.... ( -16.89)
>DroPer_CAF1 7071 94 - 1
UUCUGGGGAAUGUACUACACCAUUCCGACCUAUCACAACCCCACGGGCAUACUGUUCUCGCCAGGUAGGUCUGUCCUC------------------CGGUCAAAUAGU--UUUC
..((((((((((........))))))((((((((........((((.....))))........))))))))......)------------------))).........--.... ( -25.69)
>consensus
UUCUGGGGAAUCUACUAUACGAUACCAACGUAUCAUAAUCCCACGGGGAUUCUAUUCUCGCCAGGUAGGUUC___CAGAGUAUUU_____UAUGUACUUUUAAACUAU__UUUC
.(((((((.(((........))).)).................((((((.....)))))))))))................................................. (-10.94 = -11.08 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:33 2006