| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,018,647 – 11,018,748 |
| Length | 101 |
| Max. P | 0.754249 |
| Location | 11,018,647 – 11,018,748 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -29.98 |
| Consensus MFE | -17.54 |
| Energy contribution | -19.35 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11018647 101 - 23771897 UCCGAAAAUCGGCAACCGAUUCG------UCUGAUCCGAUUUCGAUACGAACACCUACGGGCUAUUUGGAUCGAUCGGUAAUAUUGCCGAUCCAACUGGAUUGGCGU .(((.....)))..(((((((..------...(((((((.((((...))))..((....))....))))))))))))))......((((((((....)))))))).. ( -36.20) >DroSec_CAF1 155077 101 - 1 UCCAAAAAUCGACAACCGAUUGG------UCUGAUCCGAUUUCGAUUCGAACACCUACGGGCUAUUUGGAUCGAUCUGUAAUUGUGCCUAUCCAACUGGAUUGGCGU ...........((((..((((((------......))))))((((((((((..((....))...)))))))))).......))))(((.((((....)))).))).. ( -30.20) >DroSim_CAF1 150178 101 - 1 UCCAAAAAUCGACAACCGAUUGG------UCUGAUCCGAUUUCGAUACGAACACCUACGGGCUAUUUGGAUCGAUCUGUAAUUGUGCCGAUCCAACUGGAUUGGCGU ......(((((.....)))))((------((.(((((((.((((...))))..((....))....))))))))))).........((((((((....)))))))).. ( -33.10) >DroYak_CAF1 156292 105 - 1 UCCGAAAAUCGAGAGCUCAUCG-AUCCAAUAUGAUCCGAUUUCGCCAUGACCACCUUAAAUCUACUUGAACCGAAGUGAAAUACUGCCGAUCGAAAUGGAUCG-UGU .......(((((.......)))-))...(((((((((.((((((................((.....))..((.((((...))))..))..))))))))))))-))) ( -20.40) >consensus UCCAAAAAUCGACAACCGAUUGG______UCUGAUCCGAUUUCGAUACGAACACCUACGGGCUAUUUGGAUCGAUCUGUAAUAGUGCCGAUCCAACUGGAUUGGCGU ......(((((.....)))))..........((((((((.((((...))))..((....))....))))))))............((((((((....)))))))).. (-17.54 = -19.35 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006