| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,015,340 – 11,015,458 |
| Length | 118 |
| Max. P | 0.518545 |
| Location | 11,015,340 – 11,015,458 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.95 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -13.50 |
| Energy contribution | -14.74 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11015340 118 - 23771897 UACUUGCAUUAUAUUUGACACUAAGCAUUUUGAUCUUCAGUCACUAUGUUACCCGAUUUCUGUUAACCGUUGUCAUGUUAUCAUUCUUCUGUUAGCAGUCUGCUAGUUAACAG--CAAGA ..(((((........(((((...(((((..((((.....))))..)))))....(((..(.(....).)..))).))))).........(((((((((....)).))))))))--)))). ( -24.10) >DroSec_CAF1 151788 118 - 1 UACUUACAUUAUAUUUGACAUUUAGCAUUUUGAUCUUAAGUCACAAUGUUACCCGUUCACUGUUAACCGUUGUCAUGUUAUCAUUCUUCUGUUAGCAGUGUGCUAGUUAACAG--CCAGA ..............(((((...(((((((.((((.....)))).)))))))...((.((((((((((.(.....(((....)))....).)))))))))).))..)))))...--..... ( -25.10) >DroSim_CAF1 146881 111 - 1 -------AUUAUAUUUGACAUUUAUCAUUUUGAUCUUAAGUCACUAUGUUACCCGUUUACUGUUAACCGUUGUCAUGUUAUCAUUCUACUGUUAGCAGUCUGCUAGUUAACAG--CCAGA -------........((((....(((.....))).....))))((.((((((..((..(((((((((.((....(((....)))...)).)))))))))..))..).))))).--..)). ( -19.70) >DroEre_CAF1 149182 105 - 1 -------AUUAUACAUGAC-------AUUUUGAUCUUUAGUCACUAUGUUAACCAAUUACUGUUAACCGCU-UCAUGUUACCAAUCUUCUGUUAGCACUCUGCUAUUUAACAGAGCCAGU -------........((((-------((..((((.....))))..))))))........(((((((..((.-...(((((.((......)).)))))....))...)))))))....... ( -19.00) >DroYak_CAF1 152595 112 - 1 -------AUUUUACAUGACACUUAGCAUUUUGAUCUUUAGUCGCGAUGUUACCCGAUUACUGUUAACCGCU-AUAUGUUACCAUGCCUCCGUUACCAGUCUGUAAGUUAACAGACACAGU -------........(((((..((((...(((((...((((((.(......).))))))..)))))..)))-)..))))).................((((((......))))))..... ( -21.50) >consensus _______AUUAUAUUUGACACUUAGCAUUUUGAUCUUAAGUCACUAUGUUACCCGAUUACUGUUAACCGUUGUCAUGUUAUCAUUCUUCUGUUAGCAGUCUGCUAGUUAACAG__CCAGA ......................((((((..((((.....))))..))))))........((((((((.((.....(((((.((......)).)))))....))..))))))))....... (-13.50 = -14.74 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:29 2006