Locus 382

Sequence ID 3L_DroMel_CAF1
Location 1,103,815 – 1,103,933
Length 118
Max. P 0.926917
window562

overview

Window 2

Location 1,103,815 – 1,103,933
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.31
Mean single sequence MFE -35.20
Consensus MFE -27.68
Energy contribution -28.28
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.79
SVM decision value 1.18
SVM RNA-class probability 0.926917
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1103815 118 - 23771897
CACCGAAAUGCUGAAAACAUCUUGGAACAAGUUCAAGAUACGACUGCAGACG--GUGUUCUAGAUUCGUGCAACAUUGUUGCAGAAACAGCAACUUGUUUGGCGCACAAAACGGAUCGAA
..(((...(((((.....((((((((.....))))))))....((((((.((--((((((.........).)))))))))))))...))))).....((((.....)))).)))...... ( -32.70)
>DroSec_CAF1 21040 118 - 1
CGCCGAAAUGCUGAAAACAUCUUGGAACAAGUUCAAGAUACGACUGCAGACG--GUGUUCUAGAUUUGUGCAACAUUGUUGCAGAAACAGCAACUUGUUUGGCGCACACAACCGAUCGAA
(((((((.(((((.....((((((((.....))))))))....((((((.((--((((((.........).)))))))))))))...))))).....)))))))................ ( -35.40)
>DroSim_CAF1 14417 118 - 1
CGCCGAAAUGCUGAAAACAUCUUGGAACAAGUUCAAGAUACGACUGCAGACG--GUGUUCUAGAUUCGUGCAACAUUGUUGCAGAAACAGCAACUUGUUUGGCGCACACAACCGAUCGAA
(((((((.(((((.....((((((((.....))))))))....((((((.((--((((((.........).)))))))))))))...))))).....)))))))................ ( -35.40)
>DroEre_CAF1 15029 119 - 1
CGCCGAAAUGCAGAAAACAUCUUGGAACAAGUUCAAGAUACGACUGCAGACGUUGUGUUCUAGAUUCGUGCAACAAUGUUGCAGAAACAGCAACUCGUUU-GCGCACACAACCGAUCGCA
.((.((..(((((.....((((((((.....))))))))....)))))...(((((((.........((((((....(((((.......)))))....))-)))))))))))...)))). ( -34.90)
>DroYak_CAF1 16926 120 - 1
CGCCGAAAUGCUGAAAACAUCUUGGAACAAGUUCAAGAUACGACUGCAGACGUUGUGUUCUAGAUUCGUGCAACAAUGUUGCAGAAACAGCAACUCGUUUGGCGCACACAGCCGAUCGAA
........(((((.....((((((((.....))))))))....((((((.((((((((.(.......).)).))))))))))))...)))))..(((.(((((.......))))).))). ( -37.60)
>consensus
CGCCGAAAUGCUGAAAACAUCUUGGAACAAGUUCAAGAUACGACUGCAGACG__GUGUUCUAGAUUCGUGCAACAUUGUUGCAGAAACAGCAACUUGUUUGGCGCACACAACCGAUCGAA
(((((((.(((((.....((((((((.....))))))))....((((((......(((.(.......).)))......))))))...))))).....)))))))................ (-27.68 = -28.28 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:33 2006