Locus 3815

Sequence ID 3L_DroMel_CAF1
Location 11,003,545 – 11,003,643
Length 98
Max. P 0.899660
window5943

overview

Window 3

Location 11,003,545 – 11,003,643
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 83.32
Mean single sequence MFE -40.26
Consensus MFE -28.26
Energy contribution -28.82
Covariance contribution 0.56
Combinations/Pair 1.28
Mean z-score -2.23
Structure conservation index 0.70
SVM decision value 1.01
SVM RNA-class probability 0.899660
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11003545 98 - 23771897
CUCAGGUGGGGGUUAAAUAUCAGUGGGCGGUGGGCUUGACCUUUGGAAGGAUGGCGCCCGCUGUCCAGAGAGCCAGAGAGGUGGCUUUAACAUGCCAC
.....((((.(((((((..((..((((((((((((.(.((((.....))).).).))))))))))))..))((((......)))))))))).).)))) ( -40.00)
>DroSec_CAF1 140221 96 - 1
CUCAGGUGGGGGUUAAA--UCAGUGGGCGGUGGGCCUGACCUUUGCGAGGCUGGCGCCCGCUGCCCAGAGAGCCAGAGAGGUGGCUUUAACAUGCCAC
.....((((.(((((((--((..((((((((((((((..((((...))))..)).))))))))))))..))((((......)))))))))).).)))) ( -46.70)
>DroSim_CAF1 134168 96 - 1
CUCAGGUGGGGGUUAAA--UCAGUGGGCGGUGGGCCUGACCUUUGGAAGGAUGGCGCCCGCUGCCCAGAGAGCCAGAGAGGUGGCUUUAACAUGCCAC
.....((((.(((((((--((..(((((((((((((((.(((.....))).))).))))))))))))..))((((......)))))))))).).)))) ( -45.20)
>DroEre_CAF1 137673 87 - 1
CUCAGGCGGGGGUUAAA--UCAGUGGGCGGUGGGCCUGACCUUUGG-GGAAUGGCGCCUGCUGCCC--------GAAGAGGUGGCUUUAACAUGCCAC
....(((((((((((..--((..(((((((..((((((.((....)-)...))).)))..))))))--------)..))..)))))))....)))).. ( -38.30)
>DroYak_CAF1 140135 84 - 1
CCCAGGUGGGGGUUAAA--UCAGUGGGUGGUGGGCGUGACCUUUGG-GGCAUGGCGCCUA---CAU--------GGAGUGUGGGCUUUAACAUGCCAC
(((....)))(((((..--(((.(....).)))...))))).....-((((((..(((((---(((--------...)))))))).....)))))).. ( -31.10)
>consensus
CUCAGGUGGGGGUUAAA__UCAGUGGGCGGUGGGCCUGACCUUUGG_AGGAUGGCGCCCGCUGCCCAGAGAGCCAGAGAGGUGGCUUUAACAUGCCAC
(((....)))..............((((((((((((((.(((.....))).))).)))))))))))..............(((((........))))) (-28.26 = -28.82 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:16 2006