| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,994,536 – 10,994,638 |
| Length | 102 |
| Max. P | 0.601756 |
| Location | 10,994,536 – 10,994,638 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -30.25 |
| Consensus MFE | -19.48 |
| Energy contribution | -19.53 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10994536 102 + 23771897 -----------UUACUGCUGGUUGCAACUUUU-GUCGUUGU-CCGUGCAUAAAUCGUGUGAAAUAUCGCAUUUCGCGCAUUUUCGCUUCGUGUUAACGAGUGUCACAUACGCACA----- -----------........((..(((((....-...)))))-))((((.......(((((((((.....))))))))).....((((.(((....)))))))........)))).----- ( -27.50) >DroPse_CAF1 133919 109 + 1 -----------CCCCCAUAGGUUGCAACUUUUCGUCGUUGCAUCGCGCAUAAAUCGUGUGAAAUAUCGCAUUUCGCGCAUUUUCGCUGCGUGUUAACGAGUGUCACAUACUCUAAAGGAG -----------...((....((((((((........)))))..((((((.((((.(((((((((.....)))))))))))))....))))))..)))((((((...))))))....)).. ( -30.60) >DroGri_CAF1 109585 102 + 1 -----------CCAUUUGCAGUUGCAGCUUUG-GUCGUUGU-UUGUGCAUAAAUCGUGUGAAAUAUCGCAUUUCGCGCAGUUUCGCAUCGUGUUAACGAGUGUGACAUACACACA----- -----------(((.((((....))))...))-)((((((.-.(((((..((((.(((((((((.....))))))))).)))).))).))...))))))(((((.....))))).----- ( -30.20) >DroYak_CAF1 131270 113 + 1 GUUGAUGCUGCCCCCUUGCAGUUGCAACUUUU-GUCGUUGU-CCGUGCAUAAAUCGUGUGAAAUAUCGCAUUUCGCGCAUUUUCGCUUCGUGUUAACGAGUGUCACAUACGCACA----- ((((..(((((......)))))..))))....-.((((((.-(((.((..((((.(((((((((.....)))))))))))))..))..)).).))))))((((.......)))).----- ( -33.00) >DroMoj_CAF1 136803 102 + 1 -----------CCUUUUGCAGUUGCAGCUCUU-GUCGUUGC-UCGUGCAUAAAUCGUGUGAAAUAUCGCAUUUCGCGCAGUUUCGCAUCGUGUUAACGAGUGUGACAUACACACA----- -----------.....((((...(((((....-...)))))-...)))).......((((((((..(((.....)))..))))))))((((....))))(((((.....))))).----- ( -30.50) >DroPer_CAF1 123055 115 + 1 C-----CCCCCCCCCCAUAGGUUGCAACUUUUCGUCGUUGCAUCGCGCAUAAAUCGUGUGAAAUAUCGCAUUUCGCGCAUUUUCGCUGCGUGUUAACGAGUGUCACAUGCUCUAAAGGAG .-----.......((..((((.((((((........)))))).)..((((.....(((((((((.....))))))))).....((((.(((....)))))))....)))).)))..)).. ( -29.70) >consensus ___________CCCCUUGCAGUUGCAACUUUU_GUCGUUGC_UCGUGCAUAAAUCGUGUGAAAUAUCGCAUUUCGCGCAUUUUCGCUUCGUGUUAACGAGUGUCACAUACACACA_____ .......................(((((........)))))...(((...((((.(((((((((.....))))))))))))).))).((((....))))((((.....))))........ (-19.48 = -19.53 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:11 2006