Locus 381

Sequence ID 3L_DroMel_CAF1
Location 1,103,004 – 1,103,109
Length 105
Max. P 0.965735
window561

overview

Window 1

Location 1,103,004 – 1,103,109
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.61
Mean single sequence MFE -25.18
Consensus MFE -11.54
Energy contribution -12.14
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.33
Structure conservation index 0.46
SVM decision value 1.59
SVM RNA-class probability 0.965735
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1103004 105 + 23771897
UCGACUGCC----CUGCCUAUCAAUAUCAAUAUCAGGGCGGCAAAUAAAACUUAACAUAAAAUAGGUAAAAAUCAAACGG--CGGGUGG--UGCCAGCUAGCUGCCUAUCGAA-------
(((((((((----(((..(((........))).))))))))........(((((........)))))...........((--(((.(((--(....)))).)))))..)))).------- ( -30.30)
>DroSec_CAF1 20275 85 + 1
-------------------A------UCAAUAUCAGGGCGGCAAAUAAAACUUAACAUAAAAUAGGUAAAAAUCAAACGC--C-GGUGGUUUGCCUGCUCGCUGCCUAUCGAA-------
-------------------.------.........(((((((.......(((((........)))))...........((--.-(((.....))).))..)))))))......------- ( -20.40)
>DroSim_CAF1 13426 101 + 1
UCGACUGCC----CUGCCUA------UCAAUAUCAGGGCGGCAAAUAAAACUUAACAUAAAAUAGGUAAAAAUCAAACGG--CGGGUGGUUUGCCUGCUCGCUGCCUAUCGAA-------
((((..(((----(((....------.......))))))(((.......(((((........)))))...........((--(((((((....)).))))))))))..)))).------- ( -31.70)
>DroEre_CAF1 14316 84 + 1
--------------UGCCUA------UCAAUAUCAGGGCGGCAAAUAAAACUUAACAUAAAAUAGGUAAAAAUCAAACGGGGCGGGUGG--UGC-------CUGCCUAUCGAA-------
--------------.((((.------.........))))..........(((((........)))))..........(((((((((...--..)-------))))))..))..------- ( -18.80)
>DroYak_CAF1 16153 104 + 1
UCGACUGCCCGCCCCGCCUA------UCAAUAUCAGGGCGGCAAAUAAAACUUAACAUAAAAUAGGUAAAAAUCAAACGGAGCGGCUGC---CU-------CUGCCUAUCGAACUCAAAC
((((..(((((..((((((.------.........))))))........(((((........)))))..........))).))(((...---..-------..)))..))))........ ( -24.70)
>consensus
UCGACUGCC____CUGCCUA______UCAAUAUCAGGGCGGCAAAUAAAACUUAACAUAAAAUAGGUAAAAAUCAAACGG__CGGGUGG__UGCC_GCU_GCUGCCUAUCGAA_______
...................................(((((((.......(((((........)))))......((..((...))..))............)))))))............. (-11.54 = -12.14 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:32 2006