| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,991,508 – 10,991,604 |
| Length | 96 |
| Max. P | 0.989164 |
| Location | 10,991,508 – 10,991,604 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 88.27 |
| Mean single sequence MFE | -27.60 |
| Consensus MFE | -20.09 |
| Energy contribution | -21.06 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.56 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10991508 96 - 23771897 AACAGAGACAUCGCCGCAGAGGCAACAUUUAAAGAAAUUCAAAUGAAUUCGUU-UGAGUUUCGGUUUUUGGCACAUAA---CAUA-UAUGUGGGAUACACA ..(((((((...(((.....)))..........((((((((((((....))))-)))))))).))))))).((((((.---....-))))))......... ( -31.00) >DroSec_CAF1 123538 98 - 1 AACAGAGACAUCGCCGCAGAGGCAACAUUUAAAGAAAUUCAAAUGAAUUCGUU-UGAGUUUCGGUUUUUGGCACAUAACAACAUA-UAUGUGGGAUAUAU- ..(((((((...(((.....)))..........((((((((((((....))))-)))))))).))))))).((((((........-))))))........- ( -31.00) >DroSim_CAF1 122141 98 - 1 AACAGAGACAUCGCCGCAGAGGCAACAUUUAAAGAAAUUCAAAUGAAUUCGUU-UGAGUUUUGGUUUUUGGCACAUAACAACAUA-UAUGUGGGAUAUAU- ..(((((((...(((.....)))..........((((((((((((....))))-)))))))).))))))).((((((........-))))))........- ( -28.50) >DroEre_CAF1 124341 90 - 1 AACAGAGACAUCGCCGCAAAGCCAACAUUUAAAGAAAUUCAAAUGAAUUCGUU-UGAGUUUCGGUUUUUGGCACAU------AU---GUGUACGAUAUAU- ..(((((((...((......))...........((((((((((((....))))-)))))))).)))))))((((..------..---)))).........- ( -24.40) >DroYak_CAF1 128112 93 - 1 AACAGAGACAUCGCCGCAGAGGCCGCAUUUAAAGAAAUUCAAAUGAAUUCGUUGCGAGUUUCUGUUUUUGGCACAC------AUACUAUGUAGGAUACA-- (((((((((.((((.((.(((....(((((.((....)).)))))..))))).)))))))))))))..........------.................-- ( -23.10) >consensus AACAGAGACAUCGCCGCAGAGGCAACAUUUAAAGAAAUUCAAAUGAAUUCGUU_UGAGUUUCGGUUUUUGGCACAUAA___CAUA_UAUGUGGGAUAUAU_ ..(((((((...(((.....)))..........((((((((((((....)))).)))))))).))))))).((((((.........))))))......... (-20.09 = -21.06 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:07 2006