| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,987,929 – 10,988,031 |
| Length | 102 |
| Max. P | 0.561612 |
| Location | 10,987,929 – 10,988,031 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.56 |
| Mean single sequence MFE | -15.71 |
| Consensus MFE | -3.90 |
| Energy contribution | -5.38 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10987929 102 - 23771897 UUCCAGUCA-UGUCGUUAAACUUUGUUUAAACUUCUUUUUUUUUUUAAGACUAAUC------CCAGGCGACCUUCCCACUUCCAC---CACAGACUCAAGUCU--------CAAGACUCA ....((((.-.((((((((((...)))))....((((.........))))......------....)))))..............---...((((....))))--------...)))).. ( -12.40) >DroSim_CAF1 118539 99 - 1 UUCCAGUCA-UGUCGUUAAACUUUGUUUAAACUUCUUUU--UUUUUAAGACUAAUC------CCA-GCGACCUUCCCACUUCCAC---CACAGACUCAAGUCU--------CAAGACUCA ....((((.-.((((((((((...)))))....((((..--.....))))......------...-)))))..............---...((((....))))--------...)))).. ( -12.80) >DroEre_CAF1 120840 108 - 1 UUCCAGUCA-UGUCGUUAAACUUUGUUUAAACUUCUUU----UUUUAAGACCUAUC------CCA-GCGACCUUCCCACUUCCACUUCCACAGACUCCAGUCUCAAGACGUCAAGACUCA ....((((.-((.((((.....(((((......((((.----....))))......------..)-)))).....................((((....))))...)))).)).)))).. ( -14.14) >DroYak_CAF1 123780 112 - 1 UUCCAGUCA-UGUCGUUAAACUUUGUUUAAACUUCUUUUU-UUUUUAAGACUUAUC------CCAGGCGACCUUCCCACUUCCACAUACACAGACUCAGCUCGCAAGAAGUCAAGACUCA ....((((.-.((((((((((...)))))....((((...-.....))))......------....))))).....................((((....((....))))))..)))).. ( -16.50) >DroAna_CAF1 114225 90 - 1 CCUCGGGCAGUGUCAUUAAACUUUGUUUUAAAGACUU------UUUAAGACGAAUCCAAAUCCCGGGCGACCUUCCCACUUCC-----CACUGC--C-AG----------------UUCC .....(((((((.........((((((((((((...)------)))))))))))..........(((.......)))......-----))))))--)-..----------------.... ( -22.70) >consensus UUCCAGUCA_UGUCGUUAAACUUUGUUUAAACUUCUUUU__UUUUUAAGACUAAUC______CCAGGCGACCUUCCCACUUCCAC___CACAGACUCAAGUCU________CAAGACUCA ....((((...((((((((((...)))))....((((.........))))................))))).....................(((....)))............)))).. ( -3.90 = -5.38 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:06 2006