Locus 3807

Sequence ID 3L_DroMel_CAF1
Location 10,985,142 – 10,985,241
Length 99
Max. P 0.505547
window5932

overview

Window 2

Location 10,985,142 – 10,985,241
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.75
Mean single sequence MFE -16.42
Consensus MFE -12.24
Energy contribution -12.36
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.75
SVM decision value -0.06
SVM RNA-class probability 0.505547
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10985142 99 - 23771897
UAUUUGUUAAUAGGGUCUAAUCCAAACAUAUAAUAUUUCAUCUAUGAACAGCUUACAACAGCUUGAAAAAUAAUACGCCCUGUUGGCCACCAAAAUACC
.....(((((((((((.((.................((((....)))).((((......))))..........)).)))))))))))............ ( -17.40)
>DroSec_CAF1 117207 99 - 1
UAUUUGUUAAUAGGGCCUAAUCCAAACAUAUAAUAUUUCAUCUACAAACAGCUUACAACAGCUUGAAAAAUAAUACGCCCUGUUGGCCACUAAAAUACC
.....(((((((((((..................................(((......)))((....))......)))))))))))............ ( -16.70)
>DroSim_CAF1 115767 99 - 1
UAUUUGUUAAUAGGGCCUAAUCCAAACAUAUAAUAUUUCAUCUACAAACAGCUUACAACAGCUUGAAAAAUAAUACGCCCUGUUGGCCACCAAAAUACC
.....(((((((((((..................................(((......)))((....))......)))))))))))............ ( -16.70)
>DroEre_CAF1 117941 98 - 1
UAUUUGUUAAUAGGGGCUAAUCCAAACAUAUAAUAUUUCAUCUACGAACAGCUUACAGCAGUUUGAAAAAUAAUACGCCCUGUUGGCCACCA-AAUACC
.....(((((((((((......).....................(((((.((.....)).)))))............)))))))))).....-...... ( -16.50)
>DroYak_CAF1 121028 99 - 1
UAUUUGUUAAUAGCGGCUAAUCCAAACAUAUAGUAUUUCAUCUACGCAGAGCUUACAACAGUUUGAAAAAUAAUACGCCCUGUUGGCCACCAAAAUACC
.....((((((((.(((...............(((.......)))...(((((......)))))............)))))))))))............ ( -14.80)
>consensus
UAUUUGUUAAUAGGGCCUAAUCCAAACAUAUAAUAUUUCAUCUACGAACAGCUUACAACAGCUUGAAAAAUAAUACGCCCUGUUGGCCACCAAAAUACC
.....(((((((((((............(((.((.(((((.........((((......))))))))).)).))).)))))))))))............ (-12.24 = -12.36 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:05 2006