Locus 3805

Sequence ID 3L_DroMel_CAF1
Location 10,978,273 – 10,978,378
Length 105
Max. P 0.641272
window5929

overview

Window 9

Location 10,978,273 – 10,978,378
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 76.46
Mean single sequence MFE -11.72
Consensus MFE -0.34
Energy contribution -0.38
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.37
Structure conservation index 0.03
SVM decision value 0.22
SVM RNA-class probability 0.641272
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10978273 105 - 23771897
AGCGACAGCGUUAAGACAAAAAAAAAAGCGGAAUAAUAAUAAUAAAGAAAUAUCUUCAUGCCAACAAAUCCAUUACACUCAAGUGUGCGACAACAGCAACAGCAA
.((....((((....))..........(((((.........((.((((....)))).)).........)))...((((....)))))).......))....)).. ( -13.07)
>DroGri_CAF1 92035 83 - 1
AGCGUA-----------------AA----UGGCUGACAAAAAUAA-AAAAUAUCUUCAUGCCAACAAAUCCAUUACAGUCAAGUGCACACCAGCAACAACAGCAA
.((...-----------------..----(((((((.........-.........))).))))..............((....(((......)))...)).)).. ( -10.57)
>DroSec_CAF1 110393 101 - 1
AGCGACAGCGUUAAGA---AAA-AAAAGCGGAAUAAUAAUAAUAAAGAAAUAUCUUCAUGCCAACAAAUCCAUUACACUCAAGUGCGCGACAACAGCAACAGCAA
.(((((.((.......---...-....))(((.........((.((((....)))).)).........)))...........)).))).......((....)).. ( -11.41)
>DroEre_CAF1 111065 101 - 1
AGCGACACCGUUAAGAGA----AAAAAGCCGAAUAAUAAUAAUAAAGAAAUAUCUUCAUGCCAACAAAUCCAUUACACUCAAGUGCGCGACAACAGCAACAGCAA
.(((.(((......(((.----........................(((.....))).((....))...........)))..)))))).......((....)).. (  -8.30)
>DroMoj_CAF1 112662 83 - 1
CGCGCA-----------------AA----UGGCUGACAAAAAUAA-AAAAUAUCUUCAUGCCAACAAAUCCAUUACAGUCAAGUGCGCACCACCACCAACAACAA
.(((((-----------------..----((((((..........-.............................))))))..)))))................. ( -15.23)
>consensus
AGCGACA_CGUUAAGA_______AAAAGCGGAAUAAUAAUAAUAAAGAAAUAUCUUCAUGCCAACAAAUCCAUUACACUCAAGUGCGCGACAACAGCAACAGCAA
.(((......................................................((....)).......(((......))))))................. ( -0.34 =  -0.38 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:02 2006