Locus 3804

Sequence ID 3L_DroMel_CAF1
Location 10,976,197 – 10,976,288
Length 91
Max. P 0.874473
window5928

overview

Window 8

Location 10,976,197 – 10,976,288
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 83.18
Mean single sequence MFE -19.92
Consensus MFE -18.66
Energy contribution -18.52
Covariance contribution -0.14
Combinations/Pair 1.07
Mean z-score -1.68
Structure conservation index 0.94
SVM decision value 0.89
SVM RNA-class probability 0.874473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10976197 91 + 23771897
UGUGGUUUCUGUGGCAAUGCAUUUCUCUUGUUGCCGCUGCCACAAAUUCUCCAAGUGAAUUCAGCGAAAAAAAAAAAUAAAAGAAAUACGG
((((((....((((((((...........)))))))).))))))(((((.......))))).............................. ( -20.30)
>DroSec_CAF1 108342 83 + 1
UGUGGUUUCUGUGGCAAUGCAUUGCUCUUGUUGCCGCUGCCACAAAUUCUCCAAGUGAAUUCAGCGAAAAAA--------AAUACAUAUGA
((((((....((((((((...........)))))))).))))))(((((.......)))))...........--------........... ( -20.30)
>DroSim_CAF1 106591 82 + 1
UGUGGUUUCUGUGGCAAUGCAUUUCUCUUGUUGCCGCUGCCACAAAUUCUCCAAGUGAAUUCAGCGAAAA-A--------AAUAAAUACGG
((((((....((((((((...........)))))))).))))))(((((.......))))).........-.--------........... ( -20.30)
>DroEre_CAF1 109056 82 + 1
UGUGGUUUCUGUGGCAAUGCAUUUCUCUUGUUGCCGCUGCCACAAAUUCUCCAAGCGAAUUCAGCGAAAAA---------AAGGAAUACGG
((((((....((((((((...........)))))))).)))))).(((((....((.......))......---------..))))).... ( -21.40)
>DroYak_CAF1 111861 78 + 1
UGUGGUUUCUGUGGCAAUGCAUUUCUCUUGUUGCUGCUGCCACAAAUUCUCCAAGUGAAUUCAGCGAAAAA---------A----AUACGA
.(((.(((((((((((..(((..........)))...)))))))(((((.......)))))....))))..---------.----.))).. ( -18.20)
>DroAna_CAF1 102628 72 + 1
UGUGGUUUUUGUGGCAAUGCAUUUCUCUUGUUGCCGCUGCCACAAAUUCUUCAAAAAAA-----------AG--------ACUAAAAAACA
((((((....((((((((...........)))))))).))))))...............-----------..--------........... ( -19.00)
>consensus
UGUGGUUUCUGUGGCAAUGCAUUUCUCUUGUUGCCGCUGCCACAAAUUCUCCAAGUGAAUUCAGCGAAAAAA________AAUAAAUACGA
((((((....((((((((...........)))))))).))))))............................................... (-18.66 = -18.52 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:01 2006