Locus 3803

Sequence ID 3L_DroMel_CAF1
Location 10,974,472 – 10,974,575
Length 103
Max. P 0.556786
window5927

overview

Window 7

Location 10,974,472 – 10,974,575
Length 103
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -22.85
Consensus MFE -16.43
Energy contribution -16.93
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.72
SVM decision value 0.05
SVM RNA-class probability 0.556786
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10974472 103 - 23771897
----UUGCCGUUUGGGCCAACAACUAUUAAAGU----------UGUUGCAUGUUUGGAGCUUGUAAACAAGCUUGUCGCUUCGGGCUAUAAAGUAACAAAAUAUUAUUAAAUUAAAA
----..(((.....)))((((((((.....)))----------))))).((((((.(((((((....)))))))((..(((.........)))..)).))))))............. ( -23.70)
>DroPse_CAF1 112997 98 - 1
----------UUUC-G-------CCAUUAAAGUGGUUGUUGCAUGUUGCAUGUUUGGUGCUUGUAAACAAGCUUGUCGCUUCGGCCUAUAAAGUAACAAAAUAUUAUUAAAUUAGC-
----------....-(-------((((....))))).......((((((.........(((((....))))).....((....)).......))))))..................- ( -20.50)
>DroEre_CAF1 107346 106 - 1
CUGUUUGCUGUUUG-GCCAACAACUAUUAAAGU----------UGUUGCAUGUUUGGAGCUUGUAAACAAGCUUGUCGCUUCGGCCUAUAAAGUAACAAAAUAUUAUUAAAUUAAAA
.((((.(((....(-((((((((((.....)))----------)))).........(((((((....)))))))........)))).....)))))))................... ( -27.60)
>DroYak_CAF1 110112 98 - 1
--------UGUUUG-GCCAACAACUAUUAAAGU----------UGUUGCAUGUUUGGAGCUUGUAAACAAGCUUGUCGCUUCGGCCUAUAAAGUAACAAAAUAUUAUUAAAUUAAAA
--------.....(-((((((((((.....)))----------)))).........(((((((....)))))))........))))............................... ( -23.20)
>DroAna_CAF1 100768 102 - 1
----UCGCUGUUUG-GCCAACCACUAUUAAAGU----------UGUUGCAUGUUUGGAGCUUGUAAACAAGCUUGUCGCUUCGGCCUAUAAAGUAACAAAAUAUUAUUAAAUUAAAA
----..(((....)-))...............(----------((((((.......(((((((....)))))))...((....)).......))))))).................. ( -21.60)
>DroPer_CAF1 101671 98 - 1
----------UUUC-G-------CCAUUAAAGUGGUUGUUGCAUGUUGCAUGUUUGGUGCUUGUAAACAAGCUUGUCGCUUCGGCCUAUAAAGUAACAAAAUAUUAUUAAAUUAGC-
----------....-(-------((((....))))).......((((((.........(((((....))))).....((....)).......))))))..................- ( -20.50)
>consensus
________UGUUUG_GCCAACAACUAUUAAAGU__________UGUUGCAUGUUUGGAGCUUGUAAACAAGCUUGUCGCUUCGGCCUAUAAAGUAACAAAAUAUUAUUAAAUUAAAA
...........................................((((((.......(((((((....)))))))...((....)).......))))))................... (-16.43 = -16.93 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:00 2006