Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,973,222 – 10,973,319 |
Length | 97 |
Max. P | 0.554398 |
Location | 10,973,222 – 10,973,319 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 84.29 |
Mean single sequence MFE | -28.43 |
Consensus MFE | -16.07 |
Energy contribution | -17.48 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.10 |
Mean z-score | -3.19 |
Structure conservation index | 0.57 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10973222 97 - 23771897 AUUCC--CUUUUUUUUUGCUUUUAACUUAUUUUUACCGCUCGCCGUCUGC-UGCUGCUUCAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG ....(--((((((((..((((..((((((((((((..((..((.....))-.))((((((....))))))))))))))))))..))))...))))))))) ( -32.30) >DroSec_CAF1 105411 96 - 1 AAUCC--CUUUU-UUUUGCUUUUAACUUAUUUUUACUGCUCUCCGACUGC-UGCUGCUACAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG ....(--(((((-(((.((((..((((((((((((.(((((..(....((-....))....)..).))))))))))))))))..))))...))))))))) ( -29.60) >DroSim_CAF1 103638 97 - 1 AUUCC--CUUUUUUUUUGCUUUUAACUUAUUUUUACCGCUCCCCGUCUGC-UGCUGCUACAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG ....(--((((((((..((((..((((((((((((..(((...((((((.-........)))))).))).))))))))))))..))))...))))))))) ( -31.20) >DroEre_CAF1 106095 96 - 1 AUUCC--CUUUU-UUUUGCUUUUAACUUAUUUUUACCGCUCUGCGUCUGC-CGCUGCUGCAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGACAGAGA .....--((((.-(((.((((..((((((((((((..(((...(((((((-.......))))))).))).))))))))))))..))))...))).)))). ( -29.70) >DroYak_CAF1 108853 98 - 1 AUUCCCCCUUUU-UUUUGCUGUUAACUUAUUUUUACCGCUCUGCGUCUGC-UGCUGUUGCAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGCGAGA .......(((..-((((((.(((((((((((((((..(((...(((((((-.......))))))).))).))))))))))))...))).)))))).))). ( -30.70) >DroAna_CAF1 99486 87 - 1 AUUCC-----UU-UUUUGCAUUUAACUUUU---UGCCUC----CACCAGCCAGAAGUCUCAGAUGAAGCAUGAAAAUAAGUUUUGGGAUGCAGAGAAAAC .....-----((-((((((((((.((((((---.((...----.....)).)))))).......(((((((....))..))))).))))))))))))... ( -17.10) >consensus AUUCC__CUUUU_UUUUGCUUUUAACUUAUUUUUACCGCUCUCCGUCUGC_UGCUGCUACAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG .........(((.((((((....((((((((((((..(((...((((((..........)))))).))).)))))))))))).......)))))).))). (-16.07 = -17.48 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:59 2006