Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,964,823 – 10,964,920 |
Length | 97 |
Max. P | 0.988495 |
Location | 10,964,823 – 10,964,920 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -36.68 |
Consensus MFE | -15.65 |
Energy contribution | -16.68 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.05 |
Mean z-score | -3.39 |
Structure conservation index | 0.43 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10964823 97 + 23771897 ---------CACCAAGUUGGCCAAGUGGAUAAUGCCAGAUAAUGGCGAUUUCCUGC-----CACCAGGCCAAUUGUUGCUGCCGUGCCA-AGGAGCCA--CUGCAGCAGCACCA ---------.....((((((((..((((..(((((((.....)))).))).....)-----)))..))))))))((((((((.(((.(.-....).))--).)))))))).... ( -41.20) >DroVir_CAF1 88479 98 + 1 AGCUAAUGCUACC--GUUGCACAAGUGGAUAAUGCCAGAUAAUGGCAAUUUCCUGC-----CACUUGGCCAAUUGUUGCUGCCGUG---CAAGAGCAACAC----CCAGCAC-- ......((((...--(((((.(((((((....(((((.....)))))........)-----))))))......(.((((......)---))).))))))..----..)))).-- ( -30.90) >DroPse_CAF1 101554 108 + 1 --CUGCCGCUACC--GUUGACCAAGUGGAUAAUGCCAGAUAAUGGCAAUUUCCUGCCUUGCCUCUUGGCCAAUUGUUGCUCCCGUGCCAAAGGAGCAACACUGCCACAGCAC-- --...........--((((..((((.(((...(((((.....)))))...)))...)))).....((((....(((((((((.........)))))))))..))))))))..-- ( -35.80) >DroSec_CAF1 97073 93 + 1 ---------CACCAAGUUGGCCAAGUGGAUAAUGCCAGAUAAUGGCAAUUUCCUGC-----CACCAGGCCAAUUGUUGCUGCCGUGCCA-AGGAGCCA--CUGCAGCAGC---- ---------.....((((((((..((((....(((((.....)))))........)-----)))..))))))))((((((((.(((.(.-....).))--).))))))))---- ( -39.60) >DroEre_CAF1 97732 97 + 1 ---------CACCAAGUUGGCCAAGUGGAUAAUGCCAGAUAAUGGCAAUUUCCUGC-----CACCAGGCCAAUUGUUGCUGCCGUGCCA-AGGAGCAA--CAGCAACUGCGGCA ---------..((.((((((((..((((....(((((.....)))))........)-----)))..))))))))(((((((...(((..-....))).--)))))))...)).. ( -38.40) >DroMoj_CAF1 97379 99 + 1 -GCUACUGCUACU--GUUGCACAAGUGGAUAAUGCCAGAUAAUGGCAAUUUCCUGC-----CACUUGGCCAAUUGUUGCUGCCGUGCCGCAACAGCAACAC----ACA-CAC-- -((....))...(--(((((.(((((((....(((((.....)))))........)-----))))))......((((((.((...)).)))))))))))).----...-...-- ( -34.20) >consensus _________CACC__GUUGGCCAAGUGGAUAAUGCCAGAUAAUGGCAAUUUCCUGC_____CACCAGGCCAAUUGUUGCUGCCGUGCCA_AGGAGCAA__CUGCAACAGCAC__ ...............((((.......(((...(((((.....)))))...)))......................(((((.((........)))))))........)))).... (-15.65 = -16.68 + 1.03)
Location | 10,964,823 – 10,964,920 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -40.65 |
Consensus MFE | -18.04 |
Energy contribution | -18.98 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.12 |
Mean z-score | -3.27 |
Structure conservation index | 0.44 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10964823 97 - 23771897 UGGUGCUGCUGCAG--UGGCUCCU-UGGCACGGCAGCAACAAUUGGCCUGGUG-----GCAGGAAAUCGCCAUUAUCUGGCAUUAUCCACUUGGCCAACUUGGUG--------- ......((((((.(--((.(....-.).))).)))))).(((((((((.((((-----(...(....)((((.....)))).....))))).)))))).)))...--------- ( -39.20) >DroVir_CAF1 88479 98 - 1 --GUGCUGG----GUGUUGCUCUUG---CACGGCAGCAACAAUUGGCCAAGUG-----GCAGGAAAUUGCCAUUAUCUGGCAUUAUCCACUUGUGCAAC--GGUAGCAUUAGCU --..(((((----.(((((((.(((---((((((...........)))(((((-----(........(((((.....)))))....)))))))))))).--)))))))))))). ( -38.20) >DroPse_CAF1 101554 108 - 1 --GUGCUGUGGCAGUGUUGCUCCUUUGGCACGGGAGCAACAAUUGGCCAAGAGGCAAGGCAGGAAAUUGCCAUUAUCUGGCAUUAUCCACUUGGUCAAC--GGUAGCGGCAG-- --.((((((.((..((((((((((.......)))))))))).(((((((((..((...)).(((...(((((.....)))))...))).))))))))).--.)).)))))).-- ( -47.80) >DroSec_CAF1 97073 93 - 1 ----GCUGCUGCAG--UGGCUCCU-UGGCACGGCAGCAACAAUUGGCCUGGUG-----GCAGGAAAUUGCCAUUAUCUGGCAUUAUCCACUUGGCCAACUUGGUG--------- ----..((((((.(--((.(....-.).))).)))))).(((((((((.((((-----(........(((((.....)))))....))))).)))))).)))...--------- ( -40.50) >DroEre_CAF1 97732 97 - 1 UGCCGCAGUUGCUG--UUGCUCCU-UGGCACGGCAGCAACAAUUGGCCUGGUG-----GCAGGAAAUUGCCAUUAUCUGGCAUUAUCCACUUGGCCAACUUGGUG--------- .(((...(((((((--(((..(..-..)..))))))))))..((((((.((((-----(........(((((.....)))))....))))).))))))...))).--------- ( -41.50) >DroMoj_CAF1 97379 99 - 1 --GUG-UGU----GUGUUGCUGUUGCGGCACGGCAGCAACAAUUGGCCAAGUG-----GCAGGAAAUUGCCAUUAUCUGGCAUUAUCCACUUGUGCAAC--AGUAGCAGUAGC- --...-...----.((((((((((((.((......)).((((...(((....)-----)).(((...(((((.....)))))...)))..)))))))))--))))))).....- ( -36.70) >consensus __GUGCUGUUGCAG__UUGCUCCU_UGGCACGGCAGCAACAAUUGGCCAAGUG_____GCAGGAAAUUGCCAUUAUCUGGCAUUAUCCACUUGGCCAAC__GGUA_________ ................(((((((........)).)))))...((((((.(((.........(((...(((((.....)))))...)))))).))))))................ (-18.04 = -18.98 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:56 2006