Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,100,849 – 1,100,946 |
Length | 97 |
Max. P | 0.966473 |
Location | 1,100,849 – 1,100,946 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 88.25 |
Mean single sequence MFE | -9.26 |
Consensus MFE | -7.82 |
Energy contribution | -7.66 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.08 |
Mean z-score | -2.01 |
Structure conservation index | 0.84 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1100849 97 + 23771897 CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGUCUUUGUUUAUAUGUACAUACAUAUACAUAUA ...................((((((.((....))(((((.......((.....)).......)))))))))))((((((((........)))))))) ( -11.24) >DroSec_CAF1 18109 87 + 1 CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGCCUUUGUUUAUAC----------AUACAUACA ...................((((((.((....))(((((.......((.....)).......))))))))))).....----------......... ( -9.34) >DroSim_CAF1 11250 87 + 1 CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGCCUUUGUUUAUAC----------AUACAUACA ...................((((((.((....))(((((.......((.....)).......))))))))))).....----------......... ( -9.34) >DroEre_CAF1 12200 79 + 1 CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACAAAAUUAAAUGGCCUUUGUUUAU------------------AUA ...................((((((.((....))(((((.......................)))))))))))...------------------... ( -8.20) >DroYak_CAF1 13949 79 + 1 CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACAAAAUUAAAUGGCCUUUGUUUAU------------------AUA ...................((((((.((....))(((((.......................)))))))))))...------------------... ( -8.20) >consensus CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGCCUUUGUUUAUA___________AUACAUAUA ...................((((((.((....))(((((.......................)))))))))))........................ ( -7.82 = -7.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:31 2006