| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,963,836 – 10,963,928 |
| Length | 92 |
| Max. P | 0.661575 |
| Location | 10,963,836 – 10,963,928 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.30 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -9.41 |
| Energy contribution | -8.56 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10963836 92 + 23771897 CAGCCAA-----------------CAGCAACAACUCGCUGCGCCGAAGGCAAACAAAGCAUGACGGCGCAGAAAUAUGGCUAAUAAAAUAAAACGCCAUUUGCUUAGCC ..((...-----------------.(((((.......((((((((...((.......))....))))))))....(((((..............))))))))))..)). ( -26.84) >DroVir_CAF1 87657 109 + 1 CAGUCAAAGAGAAGUCAAAGCCAGUUGUAUAGAGUUGUUCAGUCAAAAGCAAACAAUGCAUGACAUAGCACAAAUAUGGCCAAUAAAAUAAAACGCCAUUUACACAGCG .......................(((((.(((((((((...((((...(((.....))).))))))))).......((((..............)))))))).))))). ( -17.24) >DroGri_CAF1 77134 109 + 1 CAGCAAAGGUGAAGUCAAAGGCAGUUGUAUGGAGUUGUUCAGCCGAAAGCAAACAAAGCAUGACAGGGCACAAAUAUGGCCAAUAAAAUAAAACGCCAUUUACACAACG .......((((..((((...((..((((.((..(((....)))(....))).)))).)).))))..(((.((....)))))............))))............ ( -20.60) >DroEre_CAF1 96710 92 + 1 CAGCCAA-----------------CAGCAACAACUCGCUGCGCCGAAGGCAAACAAAGCAUGACGGGGCAGAAAUAUGGCUAAUAAAAUAAAACGCCAUUUGCUUAGCC ..((...-----------------.(((((.......((((.(((...((.......))....))).))))....(((((..............))))))))))..)). ( -22.74) >DroYak_CAF1 98962 92 + 1 CAGCCAA-----------------CAGCAACAACUCGCUGCGCCGAAGGCAAACAAAGCAUGACGGGGCAGAAAUAUGGCUAAUAAAAUAAAACGCCAUUUGCUUAGCC ..((...-----------------.(((((.......((((.(((...((.......))....))).))))....(((((..............))))))))))..)). ( -22.74) >DroAna_CAF1 90111 85 + 1 ------------------------CAACAGCAACUCGUUUGCUCGAAGGCAAACAAAGCAUGACGGAGCAGAAAUAUGGCUAAUAAAAUAAAACGCCAUUUGCUUAGCC ------------------------.....((.....(((((((....)))))))...........(((((((....((((..............))))))))))).)). ( -20.04) >consensus CAGCCAA_________________CAGCAACAACUCGCUGCGCCGAAGGCAAACAAAGCAUGACGGGGCAGAAAUAUGGCUAAUAAAAUAAAACGCCAUUUGCUUAGCC .........................((((....((.(((...(((...((.......))....))))))))....(((((..............))))).))))..... ( -9.41 = -8.56 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:54 2006