| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,961,026 – 10,961,126 |
| Length | 100 |
| Max. P | 0.829800 |
| Location | 10,961,026 – 10,961,126 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.93 |
| Mean single sequence MFE | -36.65 |
| Consensus MFE | -26.28 |
| Energy contribution | -27.20 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10961026 100 + 23771897 GUCCAGCCGA-GGAGAGGUGUUGAUGGGCCAGCGACA-GGACACCUGUGUCCAUCUGCUCAUCCUUCGGCUGCCGCUGCAAACACGCUCCCCCUUU-CACCUU ...(((((((-((.((.(.((.(((((((.....(((-((...)))))))))))).)).).)))))))))))..((((....)).)).........-...... ( -34.80) >DroSec_CAF1 93311 97 + 1 GGCCAGCCGA-GGAGAGGUGUUGAUGUGCCAGCGACA-GGACACCUGUGUCCAUCUGCUCAUCCUUCGGCUGACGCUGCAA---CAGUCCCCCUUU-CACCUC ((.(((((((-((((((((((((......)))).)).-(((((....))))).....))).))).)))))))..((((...---))))........-..)).. ( -33.80) >DroSim_CAF1 90310 97 + 1 GGCCAGCCGA-GGAGAGGUGUUGAUGUGCCAGCGACA-GGACACCUGUGUCCAUCUGCUCAUCCUUCGGCUGGCGCUGCAA---CAGUCCCCCUUU-CACCUU .(((((((((-((((((((((((......)))).)).-(((((....))))).....))).))).)))))))))((((...---))))........-...... ( -40.00) >DroEre_CAF1 93974 89 + 1 GGCCAGCCGA-GGAGAGGUGUUGAUGGGCCAGCGACA-GGACACCUGUGUCCAUCUGCUCAUCCUUCGGCUGCC------------ACCCCCCUUUCCCUCUU (((.((((((-((.((.(.((.(((((((.....(((-((...)))))))))))).)).).)))))))))))))------------................. ( -37.90) >DroYak_CAF1 95945 97 + 1 GGCCAGCCGA-GGAGAGGUGUUGAUGGGCCAGCGACA-GGACACCUGUGUCCAUCUGCUCAUCCUUCGGCUGCUCCUGCCA---CAACACCCCCUU-CACCUU ((((((((((-((.((.(.((.(((((((.....(((-((...)))))))))))).)).).))))))))))).....))).---............-...... ( -37.70) >DroMoj_CAF1 93933 93 + 1 GGCAGGCAGUUGCUCGGGUGUUGAAGUGCCAGCGACAUGGACACCUGUGUCAGCCUCCCCCUCCGCCGCCUGC------CA---GAGGCCCCGACU-CUCCUC (((((((.((.(...(((.(((((.((((((......))).))).....)))))..)))...).)).))))))------)(---(((.......))-)).... ( -35.70) >consensus GGCCAGCCGA_GGAGAGGUGUUGAUGGGCCAGCGACA_GGACACCUGUGUCCAUCUGCUCAUCCUUCGGCUGCCGCUGCAA___CAGUCCCCCUUU_CACCUU ...(((((((.((((((((((((......)))).))..(((((....))))).....))).))).)))))))............................... (-26.28 = -27.20 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:53 2006