Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,956,433 – 10,956,547 |
Length | 114 |
Max. P | 0.799555 |
Location | 10,956,433 – 10,956,547 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.61 |
Mean single sequence MFE | -47.12 |
Consensus MFE | -18.49 |
Energy contribution | -19.38 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.15 |
Mean z-score | -2.11 |
Structure conservation index | 0.39 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10956433 114 + 23771897 CCGUUAGGCGCUCUCCGUCUUGACAACCAGUGGCAUGGGUCCACCCAGGGUUAGGCCCGGCUGG------GACUUCUGCAGCAGUUCCUCCUGCAGUAGACUCAUCGGAUUCAUGGGUAG ((((((((((.....)).)))))).........(((((((((.(((((((.....)))...)))------)...(((((.((((......)))).)))))......)))))))))))... ( -40.70) >DroVir_CAF1 80735 96 + 1 CCGUUAGGCGCUCUCCGUCUUUACCACAAUCGGCAUGGGUCCGCCCAGGCCGA------GCGGC------GAUUUUUGCAGCAGUUCCUCCUGCUGCAGCAGCAUUGG------------ (((....((((((.((((...........(((((.((((....)))).)))))------)))).------))....((((((((......)))))))))).))..)))------------ ( -38.90) >DroPse_CAF1 92813 117 + 1 CUGUUAGGCGCUCUCCGUCUUUACCACCAUGGGCAUGGGGCCGCCGAGGCUCAGUCCUGCCUGGGCGGAUGACUUUUGCAGGAGCUCCUCCUGCAGGAGACUCAU---GUUCAUGGGCGA ..((.(((((.....)))))..))..(((((((((((((.(((((.((((........)))).)))))....((((((((((((...)))))))))))).)))))---)))))))).... ( -62.70) >DroMoj_CAF1 89597 96 + 1 CCGUUAGGCACUCUCCGUCUUUACCACAAUGGGCAUGGGUCCGCCCAUGCCGA------GGGGA------GACUUCUGCAGCAGCUCCUCCUGCUGCAGCAGCAGUGG------------ (((....((.((((((((.......))....((((((((....))))))))..------)))))------)....(((((((((......)))))))))..))..)))------------ ( -43.60) >DroAna_CAF1 83203 114 + 1 CCGUUAGGCGCUCUCCGUCUUCACCACAAUGGGCAUGGGUCCUCCCAGGCUCAGGCCCGGCUGG------GACUUCUGCAUCAGCUCCUCCUGCAGCAGGCUCAUGGGGUUCAUGGGCAG ..((((((((.....)))))...(((...(((((.((((((......)))))).)))))..)))------)))..((((..(((......)))..))))(((((((.....))))))).. ( -40.90) >DroPer_CAF1 80438 117 + 1 CUGUUAGGCGCUCUCCGUCUUUACCACCAUGGGCAUGGGGCCGCCGAGGCUCAGUCCUGCCUGGGCGGAUGACUUUUGCAGCAGCUCCUCCUGCAGGAGACUCAU---GUUCAUGGGCGA ..((.(((((.....)))))..))..(((((((((((((.(((((.((((........)))).)))))....(((((((((.((...)).))))))))).)))))---)))))))).... ( -55.90) >consensus CCGUUAGGCGCUCUCCGUCUUUACCACAAUGGGCAUGGGUCCGCCCAGGCUCAG_CC_GGCUGG______GACUUCUGCAGCAGCUCCUCCUGCAGCAGACUCAU_GGGUUCAUGGGC__ ..((.(((((.....)))))..)).....(((((.((((....)))).)))))...................((.((((((.((...)).)))))).))..................... (-18.49 = -19.38 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:51 2006