Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,954,591 – 10,954,696 |
Length | 105 |
Max. P | 0.514133 |
Location | 10,954,591 – 10,954,696 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 86.04 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -28.84 |
Energy contribution | -30.03 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.04 |
Mean z-score | -1.67 |
Structure conservation index | 0.81 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10954591 105 + 23771897 -GUGGCAAAACUGGGAAAAGUGGAAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC -..(((((...((((((..((....((.((((..(((((((......)))))))..).....((((.......))))....))).))....))..))))))))))) ( -38.70) >DroSec_CAF1 86942 87 + 1 -------------------GUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC -------------------(((((((..((.(..(((((((......)))))))..)......((((...((......)).))))......))..))))))).... ( -34.00) >DroSim_CAF1 84323 96 + 1 -GUGGCUAAA---------GUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC -..(((...(---------(((((((..((.(..(((((((......)))))))..)......((((...((......)).))))......))..))))))))))) ( -38.00) >DroEre_CAF1 87309 92 + 1 --------------GAAAAGCUGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC --------------.....(((((....(((..(.((((((......)))))))..)))..)))))..((((.((.....)).))))....(((((....))))). ( -32.40) >DroYak_CAF1 89150 105 + 1 -UUGGGAAAAGCGAGAAAAGUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC -.((((((..((.......((.((....(((..(.((((((......)))))))..)))..)).))..((((.((.....)).))))....))..))))))..... ( -38.30) >DroAna_CAF1 81546 89 + 1 UGUGGCC-----------------GAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC ....(((-----------------(...(((..(.((((((......)))))))..)))...))))..((((.((.....)).))))....(((((....))))). ( -32.10) >consensus _GUGGC_____________GUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC ...................(((((((..((.(..(((((((......)))))))..)......((((...((......)).))))......))..))))))).... (-28.84 = -30.03 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:50 2006