Locus 3794

Sequence ID 3L_DroMel_CAF1
Location 10,953,190 – 10,953,285
Length 95
Max. P 0.876693
window5916

overview

Window 6

Location 10,953,190 – 10,953,285
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 95.16
Mean single sequence MFE -24.95
Consensus MFE -20.99
Energy contribution -21.77
Covariance contribution 0.78
Combinations/Pair 1.07
Mean z-score -2.18
Structure conservation index 0.84
SVM decision value 0.90
SVM RNA-class probability 0.876693
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10953190 95 + 23771897
CCGUAAAUCUCCGCCAGGCGAAACAAUCACUUGGAGCUGAUCCAAAGCCAAACUGAAUUAUGUUGAUGGAAACAAUGCAUAAACUGGCGAACGGC
((((.......((((((((((.....))..(((((.....))))).)))........((((((...((....))..))))))..))))).)))). ( -26.30)
>DroSec_CAF1 85547 95 + 1
CCGUAAAUCUCCGCCAGGCGAAACAAUCACUUGGAGCUGAUCCAAAGCCAAACUGAAUUAUGUUGAUGGAAACAAUGCAUAAACCGGCGAACGGC
((((.......((((.(((((.....))..(((((.....))))).)))........((((((...((....))..))))))...)))).)))). ( -25.80)
>DroSim_CAF1 82914 95 + 1
CCGUAAAUCUCCGCCAGGCGAAACAAUCACUUGGAGCUGAUCCAAAGCCAAACUGAAUUAUGUUGAUGGAAACAAUGCAUAAACUGGCGAACGGC
((((.......((((((((((.....))..(((((.....))))).)))........((((((...((....))..))))))..))))).)))). ( -26.30)
>DroEre_CAF1 85909 95 + 1
CCGUAAAUCUCCGCCAGGCGAAACAAUCACUUGGAGCUCAUCCAAAGCCAAACUGAAUUAUGUUGAUGGAAACAAUGCAUAAACUGGCGAACGGC
((((.......((((((((((.....))..(((((.....))))).)))........((((((...((....))..))))))..))))).)))). ( -26.30)
>DroYak_CAF1 87645 95 + 1
CCGUAAAUCUCCACCAGGCGAAACAAUCACUUGGAGCUGAUCCAAAGCCAAACUGAAUUAUGUUGAUGGGAACAAUGCAUAAACUGGCGAACGGC
((((...((.(((...(((((.....))..(((((.....))))).)))........((((((...((....))..))))))..))).)))))). ( -22.90)
>DroAna_CAF1 80164 87 + 1
CCGUAAAUCUCCGCCAGGCGAAACAAUCACUUGGAUGUGAUCCAAAGCCAAACUGAAUUAUGUUGAUGGAAACAAUGCAUAAA--------CGGC
............(((.(((......(((((......))))).....)))........((((((...((....))..)))))).--------.))) ( -22.10)
>consensus
CCGUAAAUCUCCGCCAGGCGAAACAAUCACUUGGAGCUGAUCCAAAGCCAAACUGAAUUAUGUUGAUGGAAACAAUGCAUAAACUGGCGAACGGC
((((...((.(((...(((((.....))..(((((.....))))).)))........((((((...((....))..))))))..))).)))))). (-20.99 = -21.77 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:49 2006