Locus 3793

Sequence ID 3L_DroMel_CAF1
Location 10,952,792 – 10,952,902
Length 110
Max. P 0.557899
window5915

overview

Window 5

Location 10,952,792 – 10,952,902
Length 110
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 88.22
Mean single sequence MFE -20.10
Consensus MFE -13.57
Energy contribution -13.83
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.68
SVM decision value 0.05
SVM RNA-class probability 0.557899
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10952792 110 + 23771897
CGUUAAAAAUAUGUUACGUAUUUCUGGUAAAUAUACUAUAUUUUUA--UAUAU----GUAUAUACGCCCUCGUUUGGGCUAACCUAUGUCCUUAUAUGUUUAUAAUUAGUCAAAAA
.((((.((((((((.(((((.....(((..(((((((((((....)--)))).----))))))..((((......))))..))))))))....)))))))).)))).......... ( -22.60)
>DroSec_CAF1 85154 109 + 1
CGUUAAAAC----GUACGUAUUUCUGGUAAAUAUACUUUAUUCAUA--UAUAUGUAUGUAUAUACGCCCUCGUUUGGGCUAACCUAUGUCCUUAU-UGUUUAUCAUUAGUCAAAAA
.((((..((----((((((((...(((((((.....)))).)))..--.))))))))))......((((......))))))))............-.................... ( -19.90)
>DroEre_CAF1 85527 110 + 1
CGUUAAAAAUAUGUUACGUAUUUCUGGUAAAUAUACUUUAUUUAUAUAUAUAU----GUAUAUACGCCCCUCC-UGGGCUAACCUAUGUCCUUAU-UGUUUAUCAUUAGUCAAAAA
.((((....(((((.((((((.....(((((((.....)))))))....))))----))))))).((((....-.))))))))............-.................... ( -17.90)
>DroYak_CAF1 87259 111 + 1
CGUUAAAAAUAUGUUACGUAUUUCUGGUAAAUAUACUUUAUUUAUUUAUAUAU----GUAUAUACGCCCUUUCGAGGGCUAACCUAUGUCCUUAU-UGUUUAUCAUUAGUCAAAAA
.((((....(((((.((((((....((((((((.....))))))))...))))----))))))).(((((....)))))))))............-.................... ( -20.00)
>consensus
CGUUAAAAAUAUGUUACGUAUUUCUGGUAAAUAUACUUUAUUUAUA__UAUAU____GUAUAUACGCCCUCGCUUGGGCUAACCUAUGUCCUUAU_UGUUUAUCAUUAGUCAAAAA
.................(.(((..(((((((((...............(((((....)))))...((((......)))).................)))))))))..))))..... (-13.57 = -13.83 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:48 2006