Locus 3790

Sequence ID 3L_DroMel_CAF1
Location 10,948,191 – 10,948,302
Length 111
Max. P 0.967315
window5908

overview

Window 8

Location 10,948,191 – 10,948,302
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.36
Mean single sequence MFE -43.10
Consensus MFE -34.06
Energy contribution -34.70
Covariance contribution 0.64
Combinations/Pair 1.13
Mean z-score -2.30
Structure conservation index 0.79
SVM decision value 1.61
SVM RNA-class probability 0.967315
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10948191 111 + 23771897
AACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUUGCAAGCCGGCAA---------GCCGGGAAACUGCCAACCUGCAACAGGUAACUUGCAACCUGGCCACUUGCG
...(((((.((((.(....(((((((((...(((((...((....))))))).((((...---------.))))))))))))).(((((...)))))..).))))...)))))....... ( -47.70)
>DroSec_CAF1 80540 111 + 1
AACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCCGGCAA---------ACUGGGAAACUGGCAACCUGCAACAGGUAACUUGCAACCUGGCCACUUGCG
...(((((((((.....))))).(((.((((((((..(..(....)..)...((.((...---------.(..(....)..)...)).)).....)))))))).)))..))))....... ( -43.50)
>DroSim_CAF1 77063 111 + 1
AACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCCGGCAA---------ACUGGGAAACUUGCAACCUGCAACAGGUAACUUGCAACCUGGCCACUUGCG
...(((((((((.....))))).(((.(((((((((((..(....)..)....((((...---------.)))).....)))).(((((...))))))))))).)))..))))....... ( -41.10)
>DroEre_CAF1 80755 111 + 1
AACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCUGGCAA---------ACUGGGAAACUUGCAACCUGCAGCAGGUAACUUGCAACCUGGCCACUUGCG
...((((((((((.(.((((((((((((.((((....(..(....)..)..)))).).))---------))))(....)))))).).))))))((((........))))))))....... ( -44.80)
>DroYak_CAF1 82336 120 + 1
AACGGCCACAGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAGCUUGCAAGCGAGCAAACUGGCAAAACUGGGAAACUGGCUAACUGCAACAGGUAACUUGCAACCUGGCCACUUGCA
(((.(((.((......)).))).)))(((..((((((((....)).)))))).)))((((..((((....(..(....)..)..........(((((........))))))))).)))). ( -38.40)
>consensus
AACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCCGGCAA_________ACUGGGAAACUGGCAACCUGCAACAGGUAACUUGCAACCUGGCCACUUGCG
...(((((((((.....))))).(((.((((((((..(((.....((((....)))).............((((....))))..........))))))))))).)))..))))....... (-34.06 = -34.70 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:42 2006