Locus 379

Sequence ID 3L_DroMel_CAF1
Location 1,098,868 – 1,098,964
Length 96
Max. P 0.902345
window559

overview

Window 9

Location 1,098,868 – 1,098,964
Length 96
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 92.42
Mean single sequence MFE -28.63
Consensus MFE -23.26
Energy contribution -23.10
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 1.02
SVM RNA-class probability 0.902345
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1098868 96 - 23771897
GGAUCCACUUGAACCACCGGCCAACCACUGCGCAUC---------CAUGGCGACCAUGCAAAAAAUAAAUCAUAAAUCGAGCGACAAUGGUC---GUCGGGUGGC---CAA
((.((.....)).))...(((((.((..((......---------)).(((((((((.............................))))))---))))).))))---).. ( -25.75)
>DroSec_CAF1 16142 99 - 1
GGAUCCACUUGAACCACCGGCCAACCACUGCGCAUC---------CAUGGCGACCAUGCAAAAAAUAAAUCAUAAAUCGAGCGACAAUGGUCGUCGUCGGGUGGC---CAA
((..((((((((.....((((..((((.(((((...---------(((((...)))))...........((.......))))).)).)))).)))))))))))))---).. ( -28.00)
>DroSim_CAF1 9278 99 - 1
GGAUCCACUUGAACCACCGGCCAACCACUGCGCAUC---------CAUGGCGACCAUGCAAAAAAUAAAUCAUAAAUCGAGCGACAAUGGUCGUCGUCGGGUGGC---CAA
((..((((((((.....((((..((((.(((((...---------(((((...)))))...........((.......))))).)).)))).)))))))))))))---).. ( -28.00)
>DroEre_CAF1 10242 96 - 1
GGAUCCACUUGAACCACCGGCCAACCACUGCGCCUC---------CAUGGCGACCAUGCAAAAAAUAAAUCAUAAAUCGAGCGACAAUGGUC---GUCGGGUGGC---CAA
((.((.....)).))...(((((.((....((((..---------...)))).........................(((.((((....)))---))))))))))---).. ( -28.60)
>DroYak_CAF1 11940 108 - 1
GGAUCCACUUGAACCGCCGGCCAACCACUGCGCAUCCAUGGCAUCCAUGGCGACCAUGCAAAAAAUAAAUCAUAAAUCGAGCGACAAUGGUC---GUCGGCUGGCCACCAA
((.((.....)).))(((((((.........((((((((((...)))))).....))))...................((.((((....)))---))))))))))...... ( -32.80)
>consensus
GGAUCCACUUGAACCACCGGCCAACCACUGCGCAUC_________CAUGGCGACCAUGCAAAAAAUAAAUCAUAAAUCGAGCGACAAUGGUC___GUCGGGUGGC___CAA
.............((((((((..((((.(((((............(((((...)))))...........((.......))))).)).))))....))))).)))....... (-23.26 = -23.10 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:30 2006