| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,947,055 – 10,947,172 |
| Length | 117 |
| Max. P | 0.696136 |
| Location | 10,947,055 – 10,947,172 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.59 |
| Mean single sequence MFE | -30.79 |
| Consensus MFE | -22.59 |
| Energy contribution | -22.04 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10947055 117 + 23771897 GUGGUGCACCAUCAUCACCAUGACACCCACGCCGCCGUGGUGCAUCACAGUA---CCCCGGCCCACUUCGAUGUCCACAGCCACUCGAACCUCCUGUCCUUCGCCAAGCACGCCCUGCAC ((((((.........))))))((((........((((.(((((......)))---)).))))....(((((.((........))))))).....)))).........(((.....))).. ( -28.40) >DroVir_CAF1 72151 114 + 1 CUGGUGCACCACCAU------CACACCCAUGCCGCUGUGGUGCACAAGGCCGCCUUCCCAGCCCACUUGGACGUACAUAGCCAUGCCAAUCUACUGUCCUUUGCCAAGCAUCAUUUGCAC ...(((((((((...------..((....)).....)))))))))..(((.((.......))......(((((((.((.((...))..)).))).))))...)))..(((.....))).. ( -28.10) >DroSec_CAF1 79418 117 + 1 GUGGUGCACCACCAUCACCAUGACACCCAUGCCGCCGUGGUGCAUCACAGUA---UUCCGGCUCACUUCGAUGUCCACAGCCACUCGAACCUGCUGUCCUUCGCCAAGCACGCCCUGCAC ((((((((((((......((((.....)))).....)))))))))))).(((---...(((((.....(((.....(((((...........)))))...)))...))).))...))).. ( -35.30) >DroEre_CAF1 79716 117 + 1 GUGGUGCACCACCACCACCAUGACACCCACGCCGCCGUGGUGCAUCACAGUA---UCCCAGCCCACUUCGAUGUCCACAGCCACUCGAACCUCCUAUCCUUCGCCAAGCACGCCCUGCAC ((((((((((((........((.....)).......))))))))))))....---...........(((((.((........)))))))..................(((.....))).. ( -25.36) >DroYak_CAF1 81223 117 + 1 GUGGUGCACCACCAUCACCAUGACACCCACGCCGCCGUGGUGCAUCACAGUA---UCCCAGCCCACUUCGAUGUCCACAGCCACUCGAACCUGCUGUCCUUCGCCAAGCACGCCCUGCAC ((((((((((((........((.....)).......))))))))))))....---...((((....(((((.((........)))))))...))))...........(((.....))).. ( -30.36) >DroMoj_CAF1 80338 111 + 1 CUGGUGCACCACC---------ACAGCCACGCCGCUGUGGUGCACAAGACCAUCUACCCCGCCCACCUGGAUGUCCACAGCCACGCCAACCUGCUGGCCUUUGCCAAGCACCACUUGCAC .((((((...(((---------(((((......))))))))(((.(((..((((((...........))))))......((((.((......))))))))))))...))))))....... ( -37.20) >consensus GUGGUGCACCACCAUCACCAUGACACCCACGCCGCCGUGGUGCAUCACAGUA___UCCCAGCCCACUUCGAUGUCCACAGCCACUCGAACCUGCUGUCCUUCGCCAAGCACGCCCUGCAC ((((((((((((........................))))))))))))..................(((((.((........)))))))..................(((.....))).. (-22.59 = -22.04 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:41 2006