Locus 3787

Sequence ID 3L_DroMel_CAF1
Location 10,941,273 – 10,941,372
Length 99
Max. P 0.576486
window5903

overview

Window 3

Location 10,941,273 – 10,941,372
Length 99
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 87.66
Mean single sequence MFE -33.05
Consensus MFE -20.43
Energy contribution -22.43
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.37
Structure conservation index 0.62
SVM decision value 0.09
SVM RNA-class probability 0.576486
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10941273 99 + 23771897
UGUGGUCCAAUCCAUUUGGAAUUCCGCAAAAUCAUUAUGCCCCGCCACAU----------UCGAUACGAUUCGCUUCGAUUCGGGCUGUUUGCGGCUGAUUCCGAAAAC
..(((......)))((((((((((((((((........((((........----------((((..((...))..))))...))))..)))))))..)))))))))... ( -28.30)
>DroSec_CAF1 73724 99 + 1
UGUGGCCCAAUCCAUUUGGAAUUCCGCAAAAUCAUUAUGCCCCGCCACAU----------UCGAUCCGAUUCGCUUCGAUUCGGGCUGGUUGGGGCUGAUUCCGAAAAC
(((((.((((.....))))....))))).(((((....(((((((((..(----------((((..(((......)))..))))).))).)))))))))))........ ( -32.10)
>DroSim_CAF1 69847 99 + 1
UGUGGUCCAAUCCAUUUGGAAUUCCGCAAAAUCAUUAUGCCCCGCCACAU----------UCGAUCCGAUUCGCAUCGAUUCGGGCUGGUUGGGGCUGAUUCCGAAAAC
((((((((((.....)))))...))))).(((((....(((((((((..(----------((((..((((....))))..))))).))).)))))))))))........ ( -34.00)
>DroYak_CAF1 74980 108 + 1
UGUGGUCCAAUCCAUUUGGAAUUCCGCAAAAUCAUUAUGCCCCGCCAGAUUCGACUCCAUUCGAUGCGAUGCGAUUAGAUUCA-GGCUGGUGGGGCUGAUUCCGAAAAC
((((((((((.....)))))...))))).(((((....((((((((((.(..((.((...(((........)))...)).)).-.))))))))))))))))........ ( -37.80)
>consensus
UGUGGUCCAAUCCAUUUGGAAUUCCGCAAAAUCAUUAUGCCCCGCCACAU__________UCGAUCCGAUUCGCUUCGAUUCGGGCUGGUUGGGGCUGAUUCCGAAAAC
((((((((((.....)))))...))))).(((((....(((((((((.............((((..(((......)))..))))..))).)))))))))))........ (-20.43 = -22.43 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:37 2006