| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,928,574 – 10,928,674 |
| Length | 100 |
| Max. P | 0.816200 |
| Location | 10,928,574 – 10,928,674 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.28 |
| Mean single sequence MFE | -24.18 |
| Consensus MFE | -15.74 |
| Energy contribution | -16.82 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.816200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10928574 100 + 23771897 UC--GGGCG--UCUAUUAUUGAUUUUCAAAUGCUUUUUGGCGCUAUAAAUCGGCCAGUGAUGGUUAAAAACUCA-AAAUAGCCAA--AGCAAACAAUGCCCGCCAGA .(--(((((--(......(((.....))).(((((..((((........(..((((....))))..).......-.....)))))--))))....)))))))..... ( -25.75) >DroPse_CAF1 64965 89 + 1 UUGGGGGCUUUUUUCUUAUUGAUUUUCAAAUGGUUUUGGGCGCUAUAAAUCUGU--GGGAUGCC---------A-UCGGUGCCA-----CAAACAAAGCCCG-GCGA ....(((((((.......(((.....)))...((((..((((((....(((...--..)))...---------.-..)))))).-----.))))))))))).-.... ( -23.30) >DroSec_CAF1 61154 100 + 1 UC--GGGCG--UCUAUUAUUGAUUUUCAAAUGCUUUUUGGCGCUAUAAAUCGGCCAGCGAUGGCCAAAACCAAAUAAAUAGCCAA--AUCAAACAAAGCCCG-CAGA .(--((((.--.........(((((.....((((....))))....)))))(((((....)))))....................--..........)))))-.... ( -25.30) >DroSim_CAF1 57018 99 + 1 UC--GGGCG--UCUAUUAUUGAUUUUCAAAUGCUUUUUGGCGCUAUAAAUCGGCCAGCGAUGGCCAAAAACUUA-AAAUAGCCAA--AGCAAACAAAGCCCG-CAGA .(--((((.--.......(((.....))).(((((..(((((........)(((((....))))).........-.....)))))--))))......)))))-.... ( -28.20) >DroEre_CAF1 61044 88 + 1 UC--GGGCG--UCUAUUAUUGAUUUUCAAACGCUUUUUGGCGCUAUAAAUCGG----------CCCA-AACUUA-AGAUAGCCAA--ACCAAACAAAGCCCG-CAGA .(--((((.--.........(((((.....((((....))))....)))))((----------(...-......-.....)))..--..........)))))-.... ( -20.24) >DroYak_CAF1 61108 100 + 1 UC--GGGCG--UCUAUUAUUGAUUUUCAAACGCUUUUUCGCGCUAUAAAUCGGCCAGCGAUGGCCUA-AACUCA-AUAUAGCCAAAAACCAAACAAAGCGCG-CAGA ..--(.(((--(........(((((.....(((......)))....)))))(((((....)))))..-......-......................)))).-)... ( -22.30) >consensus UC__GGGCG__UCUAUUAUUGAUUUUCAAAUGCUUUUUGGCGCUAUAAAUCGGCCAGCGAUGGCCAA_AACUCA_AAAUAGCCAA__ACCAAACAAAGCCCG_CAGA ....((((............(((((.....((((....))))....)))))(((((....)))))................................))))...... (-15.74 = -16.82 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:34 2006