Locus 3783

Sequence ID 3L_DroMel_CAF1
Location 10,924,106 – 10,924,201
Length 95
Max. P 0.694445
window5897

overview

Window 7

Location 10,924,106 – 10,924,201
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.64
Mean single sequence MFE -26.93
Consensus MFE -17.03
Energy contribution -17.78
Covariance contribution 0.75
Combinations/Pair 1.22
Mean z-score -1.62
Structure conservation index 0.63
SVM decision value 0.34
SVM RNA-class probability 0.694445
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10924106 95 + 23771897
AAAACCCGUAGGUGAGGGUGCAAUUAUCUUGUACGAUAAGUGGGAGAUGUUUAUGUUUUGAAGAACUGCCAGAUCU----GAGAUAGUGCAUCGAUGAA
...(((....)))...((((((.((((((((...(((...(((.((.(.((((.....)))).).)).))).))))----)))))))))))))...... ( -23.00)
>DroSec_CAF1 56728 95 + 1
AAAACCCGCAGGUGAGGGUGCAAUUAUCUCGUCCGAUAAGCGGGAGAUGUUUAUGGCUCAAAGAACUGCCAGAUCU----GAGAUAGUGCAUCGAUGAA
...(((....)))...((((((.(((((((.((((.....))))((((.....((((..........)))).))))----)))))))))))))...... ( -27.80)
>DroSim_CAF1 52215 95 + 1
AAAACCCGCAGGUGAGGGUGCAAUUAUCUCGUCCGAUAAGCGGGAGAUGUUUAUGGCUCAAAGAACUGCCAGAUCU----GAGAUAGUGCAUCGAUGAA
...(((....)))...((((((.(((((((.((((.....))))((((.....((((..........)))).))))----)))))))))))))...... ( -27.80)
>DroEre_CAF1 56603 85 + 1
----------AACGAGGGUGCAACUAUCUCGCCCGAUAAGCGGCAUAUGUUUAUGGCUUCAAGAACUGCCAGAUUG----GAGAUAGUGCACCGAUGAA
----------......((((((.(((((((((((.....).))).........((((..........)))).....----)))))))))))))...... ( -31.40)
>DroYak_CAF1 56396 95 + 1
CAAAACCCCAAGUGAGGGUGCAAUUAUCUCGCCCGAUAAGCGUUGGAUGUUUAUGGCUCGAAGAACUGCCAGAUCG----GAGAUAGAUCAUCGAUGAA
....(((((....).))))....(((((((..(((((....))))).......((((..........)))).....----)))))))............ ( -21.00)
>DroAna_CAF1 52395 97 + 1
-CAACUUGUAGAUGAGGGUGCAAUUAUCUCCU-CGAUAAGCGGGAGAUGUUUAUGGAUCUGGAAACUGCCAGAUCGAACAGAUAUCGAGGCCCGAUGAG
-...(((((.((.((((.........)))).)-).)))))((((.(((((((.(.(((((((......))))))).)..)))))))....))))..... ( -30.60)
>consensus
AAAACCCGCAGGUGAGGGUGCAAUUAUCUCGUCCGAUAAGCGGGAGAUGUUUAUGGCUCAAAGAACUGCCAGAUCG____GAGAUAGUGCAUCGAUGAA
................((((((.(((((((.....(((((((.....)))))))(((..........)))..........)))))))))))))...... (-17.03 = -17.78 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:30 2006