Locus 3782

Sequence ID 3L_DroMel_CAF1
Location 10,919,940 – 10,920,047
Length 107
Max. P 0.525430
window5896

overview

Window 6

Location 10,919,940 – 10,920,047
Length 107
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -30.04
Consensus MFE -16.48
Energy contribution -18.28
Covariance contribution 1.80
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.55
SVM decision value -0.02
SVM RNA-class probability 0.525430
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10919940 107 - 23771897
AUUUGCCAUGAUUUAGUGGCUGGCAUUUAAUUAUACUACCCGAUGCUUUAUUUUCAUUUCACAUGUGAAAUCAAGAACAGGUGUGAUUU-----------UGCUGCAGUGGCAAUCGU-
..(((((((.........((.((((...(((((((((........(((...((((((.......))))))..)))....))))))))).-----------)))))).)))))))....- ( -24.70)
>DroSec_CAF1 52600 115 - 1
AUUUGCCAUGAUUUAGUGGCUGGCAUUUAAUUAUA---CCCGAUGCUUCAUUUUCAUUUCACAUGUGAAAUCAAGAACAGGUGUGACUUUCAGUCAGCGAUGCUGCAGUGGCAAUCGU-
..(((((((......((.((((((......(((((---((.((....)).((((.((((((....)))))).))))...)))))))......)))))).))......)))))))....- ( -33.70)
>DroSim_CAF1 48108 115 - 1
AUUUGCCAUGAUUUAGUGGCUGGCAUUUAAUUAUA---CCCGAUGCUUCAUUUUCAUUUCACAUGUGAAAUCAAGAACAGGUGUGACUUUCAGUCAGCGAUGCUGCAGUGGCAAUCGU-
..(((((((......((.((((((......(((((---((.((....)).((((.((((((....)))))).))))...)))))))......)))))).))......)))))))....- ( -33.70)
>DroEre_CAF1 52686 109 - 1
AUUGGCCAUGAUUUAGUAGCUGGCAUUUAAUUAUA---CCUGAUGCUUCAUUU-------AAAUGUGUACUCUAGCACAGGUGUGAUUUUGAACUUGGAAUGCUGCACUCUCCAUCGUA
.......(((((..(((.((.((((((((((((((---((((.((((.(((..-------....)))......))))))))))))))).........))))))))))))....))))). ( -28.40)
>DroYak_CAF1 51911 110 - 1
AUUUGCCAUGAUUUAGUGGCUGGCAUUUAAUUAUAC-ACAUGCUGCUUCAUUU-------AAAUGUGUAAUCAAGAACAGGUGAAAUGUGGAGCUUGGGCUGUGGCUGUGGCAAUCGU-
..(((((((((((.((((.....)))).))))...(-(((.((((((((((..-------..((.(((........))).)).....)))))))...)))))))...)))))))....- ( -29.70)
>consensus
AUUUGCCAUGAUUUAGUGGCUGGCAUUUAAUUAUA___CCCGAUGCUUCAUUUUCAUUUCACAUGUGAAAUCAAGAACAGGUGUGAUUUUCAGCCAGCGAUGCUGCAGUGGCAAUCGU_
..(((((((......(((((.((((((..............))))))...........((((((.((..........)).))))))...............))))).)))))))..... (-16.48 = -18.28 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:29 2006