Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,915,449 – 10,915,565 |
Length | 116 |
Max. P | 0.836311 |
Location | 10,915,449 – 10,915,565 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 69.31 |
Mean single sequence MFE | -20.50 |
Consensus MFE | -12.96 |
Energy contribution | -12.65 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.29 |
Mean z-score | -1.46 |
Structure conservation index | 0.63 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.836311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10915449 116 - 23771897 AGUUGAAUGAGAGAUUUAUGGCUAAUACCAAUAGAUAGGAGUGAUCAAGGUUACACAUUACUCGCAUAUGUGCUAUAUAUAAAACUCAUAUGAUUCUCAUAUUCGAAUACGAAUGA ......(((((((((((((((......)).))))))..(((((((...(....)..))))))).((((((.(............).)))))).)))))))(((((....))))).. ( -22.10) >DroSec_CAF1 48358 93 - 1 AGUUGAAUGAGAGAUUUAUGGUUAAU-CCAAUAGAUACUAGUGAUCAAGGUCACACAUUGCUC----------------------UCAUAUGAUUAUCAUAUUCGUAUACGAAUGA (((((.(((((((((((((((.....-)).))))))....(((((....)))))......)))----------------------)))).)))))....((((((....)))))). ( -24.70) >DroSim_CAF1 43890 94 - 1 AGCUGAAUGGGAGAUUUAUGGUUAAUACCAAUAGAUACGAGUGAUCAAGGUCACACAUUGCUC----------------------UCAUAUGAUUAUCAUAUUCGAAUACGUAUGA ......((((((((((((((((....))).))))))....(((((....)))))......)))----------------------)))).......((((((........)))))) ( -22.20) >DroYak_CAF1 47449 89 - 1 AGUUGUGUGGAAGAUUUAUGGCAAACACCAAUUUAUACGAAUGAUGAAGGUCAUG------------------------UAAAAC-GUAGUGAUUCUCAUAUUUAAAUACUAAC-- ..(((((((((.......(((......))).)))))))))...((((..(((((.------------------------......-...)))))..))))..............-- ( -13.00) >consensus AGUUGAAUGAGAGAUUUAUGGCUAAUACCAAUAGAUACGAGUGAUCAAGGUCACACAUUGCUC______________________UCAUAUGAUUAUCAUAUUCGAAUACGAAUGA ...((((((.((((.((((((......))...........(((((....)))))...................................)))).)))).))))))........... (-12.96 = -12.65 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:28 2006