Locus 3780

Sequence ID 3L_DroMel_CAF1
Location 10,913,902 – 10,913,999
Length 97
Max. P 0.940623
window5894

overview

Window 4

Location 10,913,902 – 10,913,999
Length 97
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.98
Mean single sequence MFE -31.35
Consensus MFE -20.73
Energy contribution -20.65
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -2.23
Structure conservation index 0.66
SVM decision value 1.31
SVM RNA-class probability 0.940623
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10913902 97 - 23771897
UCAUUUGAC---UUCUCGUUGGUGAGAUAAAUUAUGUCGCUAAUGCAAAGUGCUCCGCUUUGUGUGGUGCG--GGGAGGAGUUGCAGAUACAUACAUACGUA
..(((((((---(((((((((((((.(((...))).))))))))......(((.((((.....)))).)))--..)))))))..)))))............. ( -29.00)
>DroPse_CAF1 49350 89 - 1
-----AGACUUCUCCUCGUUGGCGAGAUAAAUUAUGUCGCUAAUGCAAAGUGCUCCGCUUUGUGUGGCAGGAGGGGAGGCGACGACUCUGCCUC--------
-----...(((((((((((((((((.(((...))).))))))))((((((((...))))))))...).))))))))(((((.......))))).-------- ( -33.90)
>DroSec_CAF1 46895 97 - 1
UCAUUUGAC---UUCUCGUUGGCGAGAUAAAUUAUGUCGCUAAUGCAAAGUGCUCCGCUUUGUGUGGCGCG--GGGAGGAGUUGGAGAUACAUACAUACAUA
((.((..((---(((((((((((((.(((...))).)))))))).....((((..(((...)))..)))).--..)))))))..)))).............. ( -33.40)
>DroEre_CAF1 46911 94 - 1
UCAUUUGAC---UUCUCGUUGGCGAGAUAAAUUAUGUCGCUAAUGCAAAGUGCUCCGCUUUGUGUGGCGCG--GGGAGGAG---GAGCUGCAUGCACAUGUG
.......((---((..(((((((((.(((...))).)))))))))..))))(((((.(((((((...))))--)))....)---)))).((((....)))). ( -31.60)
>DroYak_CAF1 45885 91 - 1
UCAUUUGAC---UUCUCGUUGGCGAGAUAAAUUAUGUCGCUAAUGCAAAGUGCUCCGCUUUGUGUGGCGCG--GGGAG------UAGUUACCUGCAAAUGUU
.((((((((---(((((((((((((.(((...))).)))))))).....((((..(((...)))..)))))--)))))------)((....)).)))))).. ( -30.80)
>DroAna_CAF1 40343 83 - 1
UCAUUUGAC---UUCUCGUUGGCGAGAUAAAUUAUGUCGCUAAUGCAAAGUGCUCCGCUUUGUGAGGCGAG--GGGGGCAGA---AUCUUC-----------
.......((---((..(((((((((.(((...))).)))))))))..))))(((((.(((((.....))))--))))))...---......----------- ( -29.40)
>consensus
UCAUUUGAC___UUCUCGUUGGCGAGAUAAAUUAUGUCGCUAAUGCAAAGUGCUCCGCUUUGUGUGGCGCG__GGGAGGAG___GAGCUACAUACA_A_GU_
............(((((((((((((.(((...))).))))))))((((((((...))))))))..........)))))........................ (-20.73 = -20.65 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:27 2006