Locus 378

Sequence ID 3L_DroMel_CAF1
Location 1,096,587 – 1,096,677
Length 90
Max. P 0.814597
window558

overview

Window 8

Location 1,096,587 – 1,096,677
Length 90
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 88.52
Mean single sequence MFE -25.14
Consensus MFE -18.01
Energy contribution -18.01
Covariance contribution -0.00
Combinations/Pair 1.17
Mean z-score -2.25
Structure conservation index 0.72
SVM decision value 0.66
SVM RNA-class probability 0.814597
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1096587 90 + 23771897
GAAAAAGUCUUUCGGCCAGUUAUGCAAACAUUUGCAUAACUCUGCAAC---UUCCUUCGAUAUUAACUAACCAGGGAAAC--AGGGCUCGGAAUU
.........((((((((((((((((((....))))))))))(((....---((((((.(.((.....)).).)))))).)--))))).))))).. ( -25.00)
>DroSec_CAF1 14004 91 + 1
GAAAAAGUCUUUCGGCCAGUUAUGUAAACAUUUGCAUAACUCUGCAACUGCUUCCUUCGAUAUUAACUG--CUGGGGAAC--AGGGCUCGGAGUU
.........((((((((((((((((((....))))))))))......(((.(((((..(..........--)..))))))--))))).))))).. ( -25.60)
>DroSim_CAF1 7037 91 + 1
GAAAAAGUCUUUCGGCCAGUUAUGUAAACAUUUGCAUAACUCUGCAACUGCUUCCUUCGAUAUUAACUG--CUGGGGAAC--AGGGCUCGGAGUU
.........((((((((((((((((((....))))))))))......(((.(((((..(..........--)..))))))--))))).))))).. ( -25.60)
>DroEre_CAF1 8033 88 + 1
GAAAAAGUCUUUCGGCCAGUUAUGUAAACAUUUGCAUAACUCUGCCAAAGCUUCCUUCGAUAUUAACU-----GGGCAAC--UUGGCUCGGAGUU
(((.(((.((((.(((.((((((((((....))))))))))..))))))))))..)))........((-----((((...--...)))))).... ( -27.20)
>DroYak_CAF1 9753 90 + 1
GAAAAAGUCUUUCGGCCAGUUAUGUAAACAUUUGCAUAACUCUGCAAAUGCUUCCUUCGCUAUUAACU-----GGGGAACAGUUAGCCCAGAGUU
(((.((((.((((((..((((((((((....))))))))))))).))).))))..)))........((-----(((..........))))).... ( -22.30)
>consensus
GAAAAAGUCUUUCGGCCAGUUAUGUAAACAUUUGCAUAACUCUGCAACUGCUUCCUUCGAUAUUAACU___C_GGGGAAC__AGGGCUCGGAGUU
........((((.((((((((((((((....))))))))))..........(((((.................)))))......)))).)))).. (-18.01 = -18.01 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:29 2006