Locus 3779

Sequence ID 3L_DroMel_CAF1
Location 10,912,607 – 10,912,709
Length 102
Max. P 0.684280
window5893

overview

Window 3

Location 10,912,607 – 10,912,709
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 92.65
Mean single sequence MFE -33.08
Consensus MFE -28.68
Energy contribution -28.80
Covariance contribution 0.12
Combinations/Pair 1.13
Mean z-score -1.30
Structure conservation index 0.87
SVM decision value 0.31
SVM RNA-class probability 0.684280
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10912607 102 - 23771897
UAAUAUACUACACUUUUUUCCCAGUGCACUGGUGAGCUGCUGAGCUGGCGGCGCGUGCUAAUUAGCGUCAGUCGUCGGCGGCGACUAUAAAAAAACGUAGGC
.......((((.......((((((....)))).))((((((((..(((((((((..........))))).))))))))))))..............)))).. ( -34.80)
>DroSec_CAF1 45619 102 - 1
UUCUAUACUAUACUUUUUUCACAGUGUACUGGUGAGCUGCUGAGCUGGCGGCGCGUGCUCAUUAGCGUCAGUCGUCGGCGGCGACUAUAAAAAAACGUAGGC
.(((((..((((((........)))))).((((..((((((((..(((((((((..........))))).)))))))))))).)))).........))))). ( -30.80)
>DroSim_CAF1 41120 102 - 1
UUUUAUAGUAGACUUUUUUCCCAGUGUACUGGUGAGCUGCUGAGCUGGCGGCGCGUGCUAAUUAGCGUCAGUCGUCGGCGGCAACUAUAAAAAAACGUAGGC
(((((((((.........((((((....)))).))((((((((..(((((((((..........))))).)))))))))))).))))))))).......... ( -36.90)
>DroEre_CAF1 45612 100 - 1
-ACUAUACCAUACUUUUU-CACAGUGUGCUGGUGAGCUGCUGAGUUGGCGGCGCGUGCUAAUUAGCGUCAGUCGUCGGCGGCGACUAUAAAAAAACGUAGGC
-.((((..((((((....-...)))))).((((..((((((((..(((((((((..........))))).)))))))))))).)))).........)))).. ( -32.00)
>DroYak_CAF1 44480 102 - 1
UACUAUACUAAACUUUUUCCGCAGUGUACUGGUGAGCCGCUGAGUUGGCGGCGCGUGCUAAUUAGCGUCAGUCGUCGGCGGCGACUAUAAAAAAACGUAGGC
..((((...........(((.(((....)))).))((((((((..(((((((((..........))))).))))))))))))..............)))).. ( -30.90)
>consensus
UACUAUACUAUACUUUUUUCACAGUGUACUGGUGAGCUGCUGAGCUGGCGGCGCGUGCUAAUUAGCGUCAGUCGUCGGCGGCGACUAUAAAAAAACGUAGGC
..((((..((((((........)))))).((((..((((((((..(((((((((..........))))).)))))))))))).)))).........)))).. (-28.68 = -28.80 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:26 2006