Locus 3775

Sequence ID 3L_DroMel_CAF1
Location 10,910,103 – 10,910,210
Length 107
Max. P 0.931770
window5886

overview

Window 6

Location 10,910,103 – 10,910,210
Length 107
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 79.77
Mean single sequence MFE -33.76
Consensus MFE -24.48
Energy contribution -25.72
Covariance contribution 1.24
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.73
SVM decision value 1.22
SVM RNA-class probability 0.931770
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10910103 107 + 23771897
UGGCAG-GGUGUUGCUGUUGCUGCUGGAGUUGCUGGUGUCGCAUUGCCU-UU-GGGAGACAAUAAAAUAAAGUGGCAAACAAACUUGGCAGCCCACUAACAGCGGCGGCA
......-(.(((((((((((((((..(.(((.....((((((.(((..(-(.-.(....)...))..))).))))))....))))..))))).....)))))))))).). ( -36.40)
>DroGri_CAF1 30292 87 + 1
---UGCCAUUGUCGCUUGUGUUACUGCUGU------UGUUGCAUUGCCU-UUGGGGAAACAAUAAAAUAAAGUGGCAAACAGUC-------------AACAGCAGCAAUA
---...............((((.(((((((------(((((..((((((-((..(....).........))).))))).))).)-------------)))))))).)))) ( -22.60)
>DroSec_CAF1 43126 101 + 1
UGGCAG-GGUGUUGCUGUUGCUGCUGGUGU------UGUCGCAUUGCCU-UU-GGGAGACAAUAAAAUAAAGUGGCAAACAAACUUGGCAGCCCACUAACAGCGGCGGCA
.(((((-....)))))((((((((((.(((------((((......((.-..-.)).)))))))......((((((...((....))...).)))))..)))))))))). ( -34.30)
>DroSim_CAF1 38633 101 + 1
UGGCAG-GGUGUUGCUGUUGCUGCUGGUGU------UGUCGCAUUGCCU-UU-GGGAGACAAUAAAAUAAAGUGGCAAACAAACUUGGCAGCCCACUAACAGCGGCGGCA
.(((((-....)))))((((((((((.(((------((((......((.-..-.)).)))))))......((((((...((....))...).)))))..)))))))))). ( -34.30)
>DroYak_CAF1 41890 98 + 1
----UC-GAUGUUGCUGUUGCUGCUGGUGU------UGUCGCCUUGCCUUUU-GGGCGGCAAUAAAAUAAAGUGGCAAACAAACUUGGCAGCCCACUAACAGCAGCGGCA
----..-.....(((((((((((.((((((------((((((((........-)))))))))...........(((...((....))...)))))))).))))))))))) ( -41.20)
>consensus
UGGCAG_GGUGUUGCUGUUGCUGCUGGUGU______UGUCGCAUUGCCU_UU_GGGAGACAAUAAAAUAAAGUGGCAAACAAACUUGGCAGCCCACUAACAGCGGCGGCA
.......(.(((((((((((((((..(.((......((((((.(((........(....).......))).)))))).....)))..))))).....)))))))))).). (-24.48 = -25.72 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:20 2006