| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,909,830 – 10,909,932 |
| Length | 102 |
| Max. P | 0.770437 |
| Location | 10,909,830 – 10,909,932 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.29 |
| Mean single sequence MFE | -20.98 |
| Consensus MFE | -11.23 |
| Energy contribution | -10.90 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10909830 102 + 23771897 -----------GAAGGGGUGGACAAUUGAUUUCAAUUUGCAAUCGAAUUGAAAUGAAAUCAGUGACAAAACAAACGCCACUGGUGGCGACAACUUACACCCGCAUCUCGCAAU- -----------....(((((....((((((((((.(((.((((...)))))))))))))))))...........(((((....)))))........)))))((.....))...- ( -29.80) >DroVir_CAF1 32957 98 + 1 -----------UCAAG-AAUAGCAAUUGAUUUCAAUUUGCAAUCAAAUUGAAAUGAAAUCAAUGACAAAACAAAAACG-AUAAAAGCAACAACUUACACCCGCAUA---GAUUG -----------.....-....((..((.(((((((((((....))))))))))).)).....................-....(((......)))......))...---..... ( -12.00) >DroGri_CAF1 29999 98 + 1 -----------GCAUG-AAUAACAAUUGAUUUCAAUUUGCAAUCAAAUUGAAAUGAAAUCAAUGACAAAACAAAAAUG-AUAAGAGCGACAACUUACACCCGCAUA---CAUGU -----------(((((-........((.(((((((((((....))))))))))).)).....................-......(((............)))...---))))) ( -16.90) >DroYak_CAF1 41618 105 + 1 UG--------GAAAAG-GGUGACAAUUGAUUUCAAUUUGCAAUCGAAUCGAAAUGAAAUCAGUGACAAAACAAACGCCAAUGGAAGCGACAACUUACACCCGCAUCUCGCAAUU ..--------.....(-((((...((((((((((.((((.........)))).))))))))))...........(((........)))........)))))((.....)).... ( -24.30) >DroMoj_CAF1 41104 98 + 1 -----------UCGAC-GAUGACAAUUGAUUUCAAUUUGCAAUCAAAUUGAAAUGAAAUCAAUGACAAAACAAAAACG-ACAAAGGCGACAACUUACACCCGCAUA---GAAUU -----------(((.(-(((....))))(((((((((((....)))))))))))......................))-).....(((............)))...---..... ( -14.10) >DroAna_CAF1 33980 111 + 1 UCGGCGCCACGGAGGG-AGUGACAAUUGAUUUCAAUUUGCAAUCGAAUCGAAAUGAAAUCAGUGACAAAACAAACCCCGAUGGAGGCGACAACUUACACCCGCAUCUCGCA-U- (((.(.((((((.((.-.((....((((((((((.((((.........)))).))))))))))......))...))))).))).).)))............((.....)).-.- ( -28.80) >consensus ___________GAAAG_AAUGACAAUUGAUUUCAAUUUGCAAUCAAAUUGAAAUGAAAUCAAUGACAAAACAAAAACC_AUAAAAGCGACAACUUACACCCGCAUA___CAAUU ........................(((((((((((((((....))))).....))))))))))......................(((............)))........... (-11.23 = -10.90 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:19 2006