Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,906,425 – 10,906,538 |
Length | 113 |
Max. P | 0.792959 |
Location | 10,906,425 – 10,906,538 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -21.24 |
Energy contribution | -21.27 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.19 |
Structure conservation index | 0.92 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10906425 113 - 23771897 GUGGAAUGAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACACAACAA (((...(((((...(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....)))....)))))...)))..... ( -25.30) >DroVir_CAF1 29390 110 - 1 AUGAACUUAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA--- ..........(((.(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).........))).....--- ( -22.60) >DroGri_CAF1 26788 110 - 1 AUGAAAUUAUUGCAUGCAGCAUUUACCGUAUUAAUAAAUUAUAAGUAUUUAUGUGCUGUCAGAAUUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA--- ..............(((.((.............((((((.......)))))).(((((((((....).))))))))..))..(((.....))).........))).....--- ( -19.20) >DroEre_CAF1 37755 113 - 1 GUGGAAUGAUGGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACACAACAA (((...((((....(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).....))))...)))..... ( -24.40) >DroYak_CAF1 37413 113 - 1 GUGGAAUGAUGGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACACAACAA (((...((((....(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).....))))...)))..... ( -24.40) >DroMoj_CAF1 37145 110 - 1 AUGAACUUAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA--- ..........(((.(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).........))).....--- ( -22.60) >consensus AUGAAAUGAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA___ ...........((.(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).........))......... (-21.24 = -21.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:18 2006