Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,905,655 – 10,905,746 |
Length | 91 |
Max. P | 0.915386 |
Location | 10,905,655 – 10,905,746 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 68.99 |
Mean single sequence MFE | -21.88 |
Consensus MFE | -15.02 |
Energy contribution | -15.82 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.20 |
Mean z-score | -1.40 |
Structure conservation index | 0.69 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10905655 91 + 23771897 UUAAUAU-------------------GUGUUCAAUUAGAACACUUUACACUUUUUCUCCCUGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG .......-------------------((((((.....))))))....(((...........)))..(((.(((.((.((.((((.(....).)))))).)).))).))). ( -24.60) >DroSec_CAF1 38913 75 + 1 -----------------------------------UAGAACUCUGCACACUUUUUCUCCCUGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG -----------------------------------.(((((((((((((...........))))))))))(((.((.((.((((.(....).)))))).)).)))))).. ( -25.10) >DroSim_CAF1 34417 75 + 1 -----------------------------------UAGAACUCUGCACACUUUUUCUCUCUGUGCACAAUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG -----------------------------------.(((....((((((...........))))))....(((.((.((.((((.(....).)))))).)).)))))).. ( -16.50) >DroEre_CAF1 37003 93 + 1 UUCAUAU---------CUA-AACUAAGCGUUCGAUCAGAAUCCUGCACGCUUUUUCUCCCUGUGCAGAGUCCGCAGUCUUGGGGUCUGAAGUCUCCAG-------UCUCG .......---------...-......(((..((((....)))(((((((...........))))))).)..)))((.((.((((.(....).))))))-------.)).. ( -20.00) >DroYak_CAF1 36592 103 + 1 GUCAUGUAACCUAUUUUUAAUUCUAAAAGUUCGUUUAGAAUUCUGCACAUUUUUUGUCCCAGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAG-------UCUCG ....((((..((......(((((((((......)))))))))((((((.............))))))))..))))...((((((.(....).))))))-------..... ( -23.22) >consensus _U_AU_U_____________________GUUC__UUAGAACUCUGCACACUUUUUCUCCCUGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG ...................................((((.(((((((((...........))))))))))))).....((((((.(....).))))))............ (-15.02 = -15.82 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:17 2006