Locus 3771

Sequence ID 3L_DroMel_CAF1
Location 10,905,110 – 10,905,204
Length 94
Max. P 0.983111
window5882

overview

Window 2

Location 10,905,110 – 10,905,204
Length 94
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 78.16
Mean single sequence MFE -35.62
Consensus MFE -23.60
Energy contribution -24.92
Covariance contribution 1.32
Combinations/Pair 1.21
Mean z-score -2.35
Structure conservation index 0.66
SVM decision value 1.93
SVM RNA-class probability 0.983111
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10905110 94 - 23771897
CGUCAGAGACGGCGAAGGUCAACAGAUUGUCGCUGUCGGACUG----------GAGUGGAGUACUCUAUAGCGGCUAAAGACUGUGGUGGCUUAGAUGCUGGUG
.(((...((((((((..(((....)))..)))))))).)))..----------......((((.((((.(((.((((.......)))).))))))))))).... ( -34.00)
>DroSec_CAF1 38406 94 - 1
CGUCAGAGACGGCGAAGGUCAACAGAUUGUCGCUGUCGGACUG----------GAGUGGAGUACUCUAUAGCGGCUACAGACUGUGGUGGCUCAGAUGCUGGUG
(..(((.((((((((..(((....)))..))))))))...(((----------(.(((((....))))).((.(((((.....))))).))))))...)))..) ( -36.60)
>DroSim_CAF1 33928 94 - 1
CGUCAGAGACGGCGAAGGUCAACAGAUUGUCGCUGUCGGAGUG----------GAGUGGAGUACUCUAUAGCGGCUACAGACUGUGGUGGCUUAGACGCUGGUG
((((...((((((((..(((....)))..))))))))...(((----------(((((...))))))))(((.(((((.....))))).)))..))))...... ( -38.50)
>DroEre_CAF1 36449 103 - 1
CGUCGGAGACGGCGAAGGUCAACAGAUUGUCGCUGUCGGACUGGACUGGAGUGGAGUGGAGUACUCUAUGGUGGCUAAAGGCAAUGG-GGCUUAGAUGCUGGUG
.(((...((((((((..(((....)))..))))))))....(((.(((..((((((((...))))))))..))))))..))).....-(((......))).... ( -33.30)
>DroAna_CAF1 29262 91 - 1
CGUUGGAGACGGCGAAGGUCAACAGAUUGUCGAUGUCGGCCUGCUCGG-U---CUGUGGGGUACUAUGGACCAGGUAAUACCAAUAUUGGU----AUAC-----
(((((....))))).(((((.(((.........))).)))))((..((-(---((((((....)))))))))..)).((((((....))))----))..----- ( -35.70)
>consensus
CGUCAGAGACGGCGAAGGUCAACAGAUUGUCGCUGUCGGACUG__________GAGUGGAGUACUCUAUAGCGGCUAAAGACUGUGGUGGCUUAGAUGCUGGUG
.(((...((((((((..(((....)))..)))))))).)))..................((((.((((.(((.((((.......)))).))))))))))).... (-23.60 = -24.92 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:16 2006