Locus 3770

Sequence ID 3L_DroMel_CAF1
Location 10,903,701 – 10,903,792
Length 91
Max. P 0.690254
window5881

overview

Window 1

Location 10,903,701 – 10,903,792
Length 91
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.91
Mean single sequence MFE -27.39
Consensus MFE -19.59
Energy contribution -20.59
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.72
SVM decision value 0.33
SVM RNA-class probability 0.690254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10903701 91 + 23771897
UGUCUUGUGGCAGCAUCCAAAGCGGGGAACCCAAAACGGGAGGC-AUCUAUUCCCCACUCCCUCGCAG-----------------AAAAAG---------UGCUCCAGGAUGCACUGA
((((....))))((((((..((.(((((((((.....)))((..-..)).)))))).)).....(((.-----------------......---------)))....))))))..... ( -29.30)
>DroSec_CAF1 36965 90 + 1
UGUCUUGUGGCAGCAUCCAAAGCGG-GAUCCCAAAACGGGAGGC-AUCUAUUCCCCACUCCCUCGCCG-----------------AAAAAG---------UGCUCCAGGAUGCACUGA
((((....))))((((((..(((((-....))....(((((((.-...............)))).)))-----------------......---------.)))...))))))..... ( -27.49)
>DroSim_CAF1 32541 90 + 1
UGUCUUGUGGCAGCAUCCAAAGCGG-GAUCCCAAAACGGGAGGC-AUCUAUUCCCCACUCCCUCGCUG-----------------AAAAAG---------UGCUCCAGGAUGCACUGA
((((....))))((((((..(((((-((((((.....))))((.-.........))..))))..(((.-----------------....))---------))))...))))))..... ( -28.50)
>DroEre_CAF1 34818 92 + 1
UGUCUUGUGGCAGCAACCAAAGCGG-GAUCCCAAAACGGGAGGCCAUCUAUUCCCCACUCCCUGGC----------------AAGAAACAG---------UGCUCCAGGAUGCACUGA
((((..((((..((.......))((-..((((.....))))..)).........)))).....)))----------------).....(((---------(((........)))))). ( -28.30)
>DroYak_CAF1 34435 108 + 1
UGUCUUGUGGCAGCAUCCAAAGCGG-GUUCCCAAAACGGGAGGCAAUCUAUUCCCCACUCCCUCGCCAAAAAAAUACAAAAAAAAAAACAC---------UGCUCCAGGAUGCACUGA
((((....))))((((((..(((((-..((((.....))))(((....................))).......................)---------))))...))))))..... ( -28.45)
>DroAna_CAF1 28014 95 + 1
UGUCUUGUGGCAGCAACCAAAGCGG-UGAACCAAAACGGGAGGCAAUCUAUUCCCCACUCC-----AG-----------------AAAAACCAUCUCGGAUUCGCAGGGAUACCCUGA
((((((.((...((.......))((-....))....)).)))))).............(((-----((-----------------(.......))).)))....(((((...))))). ( -22.30)
>consensus
UGUCUUGUGGCAGCAUCCAAAGCGG_GAUCCCAAAACGGGAGGC_AUCUAUUCCCCACUCCCUCGCAG_________________AAAAAG_________UGCUCCAGGAUGCACUGA
((((....))))((((((..(((((.....)).....(((((...............))))).......................................)))...))))))..... (-19.59 = -20.59 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:15 2006