Locus 3769

Sequence ID 3L_DroMel_CAF1
Location 10,901,232 – 10,901,324
Length 92
Max. P 0.776813
window5880

overview

Window 0

Location 10,901,232 – 10,901,324
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.77
Mean single sequence MFE -21.37
Consensus MFE -16.45
Energy contribution -16.20
Covariance contribution -0.25
Combinations/Pair 1.27
Mean z-score -1.57
Structure conservation index 0.77
SVM decision value 0.55
SVM RNA-class probability 0.776813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10901232 92 - 23771897
UCUC-UUUAAUUUCGCAU-AAAUAUA-AAGAGUAUUUCACCGAUCGGUUAUUUGGCCUUUCCCCAAUUUGGAGGGCCUAAUCUGUGGCUGCUUCU
.(((-((((((((.....-)))).))-))))).........((.(((((((..((((((((........))))))))......)))))))..)). ( -22.60)
>DroSec_CAF1 34503 91 - 1
UCUC-UUAAA-AAUGCAU-AAUUAUA-AAGAGUAUUUCAUUGUUCGGUUAUUUGGCCUUUCCCCAAUUUGGAGGGCCUAAUCUGUGGCUGCUUCU
.(((-((.(.-(((....-.))).).-)))))............(((((((..((((((((........))))))))......)))))))..... ( -19.10)
>DroSim_CAF1 30092 92 - 1
UCUC-UUUAAUUUUGCGU-AAUUAUA-AAGAGUAUUUCAUCGAUCGGUUACUUGGCCUUUCCCCAAUUUGGAGGGCCUAAUCUGUGGCUGCUUCU
.(((-(((((((......-)))..))-))))).........((.(((((((..((((((((........))))))))......)))))))..)). ( -23.30)
>DroEre_CAF1 32387 93 - 1
UCUCACUUGAUUUUGCAU-AAAGGUA-AAGAGUAUUUUAUCGAUCGGCUAUUUGGCCUUUCCCCAAUUUGGAGGGCCUAAUCUGUGGCUGCUGCU
..............(((.-...((((-(((....)))))))...(((((((..((((((((........))))))))......))))))).))). ( -24.00)
>DroYak_CAF1 31757 93 - 1
UCUU-UUUGAUUUUGCCAAAAUUGUA-AAGUGUAUUUCAACGAUCGGCUUUUUGGCCUUUCCCCAAUUUGGAGGGCCUAAUCUGUAGCUGCUUCU
....-....(((((((.......)))-))))..........((.(((((....((((((((........))))))))........)))))..)). ( -20.30)
>DroAna_CAF1 25392 78 - 1
----------------GU-UAUUAAAUGAGAGUAUUAUAGUCAUCGGUUUGUUGGCCUUUCCCCAAUUUGGAGGGCCUAAUCUUUGGCAGCUUCU
----------------..-....................((((..((((....((((((((........)))))))).))))..))))....... ( -18.90)
>consensus
UCUC_UUUAAUUUUGCAU_AAUUAUA_AAGAGUAUUUCAUCGAUCGGUUAUUUGGCCUUUCCCCAAUUUGGAGGGCCUAAUCUGUGGCUGCUUCU
............................................(((((((..((((((((........))))))))......)))))))..... (-16.45 = -16.20 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:14 2006