Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,899,494 – 10,899,590 |
Length | 96 |
Max. P | 0.595617 |
Location | 10,899,494 – 10,899,590 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -26.95 |
Consensus MFE | -24.28 |
Energy contribution | -24.53 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.07 |
Mean z-score | -1.17 |
Structure conservation index | 0.90 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10899494 96 - 23771897 GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACACA (((((...(((((.(..((((..........((((((((...........))))))))...........))))..)))))).....)))))..... ( -27.30) >DroSec_CAF1 32776 96 - 1 GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACAUC (((((...(((((.(..((((..........((((((((...........))))))))...........))))..)))))).....)))))..... ( -27.30) >DroSim_CAF1 28340 96 - 1 GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACAAC (((((...(((((.(..((((..........((((((((...........))))))))...........))))..)))))).....)))))..... ( -27.30) >DroEre_CAF1 30672 96 - 1 GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGCUCGUUGGAUUCGAGGGAGGAGCACACA (((((...(((((.(..((((..........((((((((...........))))))))..((.....))))))..)))))).....)))))..... ( -28.40) >DroYak_CAF1 30006 96 - 1 GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGCAUUCGAGGGAGGAGUACACA (((((((....))(((..(((..........((((((((...........))))))))(((((.(......).))))))))..))))))))..... ( -25.00) >DroAna_CAF1 23842 96 - 1 GCUCCGCGUGAGCUCUGACGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGGCACAGUCCGAGGAGGAGGUGGAC .((((((.(((((.(((((((....)))...((((((((...........)))))))).....)))))))))))....((....))))))...... ( -26.40) >consensus GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACACA (((((((....))(((..(((.....((((.(((..((((.(((......)))......)))).))).))))......)))..))))))))..... (-24.28 = -24.53 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:13 2006