Locus 3765

Sequence ID 3L_DroMel_CAF1
Location 10,891,937 – 10,892,034
Length 97
Max. P 0.996841
window5874

overview

Window 4

Location 10,891,937 – 10,892,034
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 91.55
Mean single sequence MFE -25.80
Consensus MFE -21.74
Energy contribution -22.14
Covariance contribution 0.40
Combinations/Pair 1.10
Mean z-score -2.45
Structure conservation index 0.84
SVM decision value 2.76
SVM RNA-class probability 0.996841
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10891937 97 + 23771897
CUCCUCUUUCGCUGAUUCCACAUGCGUGUGUCAACAUGCGUGCAACAAGUUCUCACUCUUCCAAAUCUUAGAGCUCUUCCUUGGAGUCUUUGCAAUG
..........((.((((((((((((((((....))))))))).....((((((................))))))......)))))))...)).... ( -26.59)
>DroSec_CAF1 24329 97 + 1
CUCCUCUUUCGCUGAUUCCACAUGCGUGUGUCCACAUGCGUGCAACAAGUUCCCACUCUUCCAAAUCUAAGAGCUCUUCCUUGGAGUCUUUGCCAUG
..........((.((((((((((((((((....))))))))).............(((((........)))))........)))))))...)).... ( -25.70)
>DroSim_CAF1 20903 97 + 1
CUCCUCUUUCGCUGAUUCCACAUGCGUGUGUCAACAUGCGUGCAACAAGUUCCCACUCUUCCAAAUCUAAGAGCUCUUCCUUGGAGUCUUUGCCAUG
..........((.((((((((((((((((....))))))))).............(((((........)))))........)))))))...)).... ( -25.90)
>DroEre_CAF1 23277 97 + 1
CUCCGCUCUUCCUGAUUCCACAUGCGUGUGUCAACAUGCGUGCAACAAGUUCCCACUCUGCCAAAACGUGGAGCUCUUCCUUGGAGUCUUUGCCAUG
....((.......((((((((((((((((....))))))))).....((((((.((...........))))))))......)))))))...)).... ( -27.40)
>DroYak_CAF1 21637 97 + 1
CUCCUCUCGUCUUCAUGCCACAUGCGUGUGUCAACAUGCGUGCAACAAGUUCCCACUCUUCCGAAACGUGGAGCUCUUCCUUGGAGUCUUUGCCAUG
.............((((...(((((((((....))))))))).........................(..(((((((.....)))).)))..))))) ( -23.40)
>consensus
CUCCUCUUUCGCUGAUUCCACAUGCGUGUGUCAACAUGCGUGCAACAAGUUCCCACUCUUCCAAAUCUUAGAGCUCUUCCUUGGAGUCUUUGCCAUG
.............((((((((((((((((....))))))))).............(((((........)))))........)))))))......... (-21.74 = -22.14 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:08 2006