Locus 3764

Sequence ID 3L_DroMel_CAF1
Location 10,889,930 – 10,890,049
Length 119
Max. P 0.533214
window5873

overview

Window 3

Location 10,889,930 – 10,890,049
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.94
Mean single sequence MFE -27.64
Consensus MFE -19.98
Energy contribution -20.26
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.92
Structure conservation index 0.72
SVM decision value -0.00
SVM RNA-class probability 0.533214
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10889930 119 + 23771897
GCUUUACGAUGCAUAAUAGUCCGUUGGCUUAGGU-UUUUUUUUUCGAGCAUUGCUCUGAAUUUUCUUGGAACAUUUUAUUAAAAUCUUUACUUUUAAUGGGGCUUGUGUUUGGUAAAGUA
(((((((.(.(((((..(((((..((..(((((.-.......(((((((...)))).)))....)))))..))...((((((((.......)))))))))))))))))).).))))))). ( -27.70)
>DroSec_CAF1 22366 117 + 1
GCUUUACGAUGCAUAAUAGUCCGUUGGCUUAGGU-UUU--UUUUCGAGCAUUGCACUGAAUUUUCUUGGAACAUUUAAUUAAAAACUUUACAUUUAAUGGGGAUUGUGUUUGGUAAAGUA
(((((((.(.(((((((..((((((((...((((-(((--(..(..((..((.((..((....)).)).))..))..)..)))))))).....)))))))).))))))).).))))))). ( -27.60)
>DroSim_CAF1 18932 116 + 1
GCUUUACGAUGCAUAAUAGUCCGUUGGCUUAGGU-UU---UUUUCGAGCAUUGCACUGAAUUUUCUUGGAACAUUUUAUUAAAAACUUUACUUUUAAUGGGGCUUGUGUUUGGUAAAGUA
(((((((.(.(((((..(((((((..((((..(.-..---..)..))))...))......................((((((((.......)))))))))))))))))).).))))))). ( -26.80)
>DroEre_CAF1 21281 115 + 1
GCUUUACGAUGCAUAAUAGUCCGUUGGCUUAGG-----UUUUUUCGAGCAUUGCACUGAAUUUCCUCGGAACAUUUUAUUAAAAACUUUACUUUUAAUGGGGCUCGUGUUUAGUAAAGUA
(((((((...((((...(((((((..((((..(-----....)..))))...)).((((......)))).......((((((((.......))))))))))))).))))...))))))). ( -27.50)
>DroYak_CAF1 19578 118 + 1
GCUUUACGAUGCAUAAUAGUCCAUUGGCUUAGGCAUUUUUUUUUCGUGCAUUGCACUGAAUUUUCUUGGAACAUUUUAUUAAAAACUUUACUCUUAAUGGGCCUUGUGUU--GUAAAGUA
(((((((((((((.....((((((((((....))........(((((((...)))).)))..................................))))))))..))))))--))))))). ( -28.60)
>consensus
GCUUUACGAUGCAUAAUAGUCCGUUGGCUUAGGU_UUUUUUUUUCGAGCAUUGCACUGAAUUUUCUUGGAACAUUUUAUUAAAAACUUUACUUUUAAUGGGGCUUGUGUUUGGUAAAGUA
(((((((.(.((((((...(((((((((((..(.........)..))))......((((......)))).........................)))))))..)))))).).))))))). (-19.98 = -20.26 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:07 2006