Locus 3763

Sequence ID 3L_DroMel_CAF1
Location 10,889,137 – 10,889,243
Length 106
Max. P 0.999531
window5872

overview

Window 2

Location 10,889,137 – 10,889,243
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 99.25
Mean single sequence MFE -37.20
Consensus MFE -37.20
Energy contribution -37.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.56
Structure conservation index 1.00
SVM decision value 3.69
SVM RNA-class probability 0.999531
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10889137 106 + 23771897
GCGACAAGAACGGCCGCGAAGGCCGUUGCACAUAUGGCAAAAAUUGUCAACACACUGCGGCCCAUAAAAGCAGCGGCUAUGAGAGAUUCGAACACGAUACGCGGCC
...........(((((((..(((((((((...((((((......(((....))).....).)))))...))))))))).........(((....)))..))))))) ( -37.20)
>DroSec_CAF1 21344 106 + 1
GCGACAAGAACGGCCGCGAAGGCCGUUGCACAUAUGGCAAAAAUUGUCAACACACUGCGGCCCAUAAAAGCAGCGGCUAUAGGAGAUUCGAACACGAUACGCGGCC
...........(((((((..(((((((((...((((((......(((....))).....).)))))...))))))))).........(((....)))..))))))) ( -37.20)
>DroSim_CAF1 17906 106 + 1
GCGACAAGAACGGCCGCGAAGGCCGUUGCACAUAUGGCAAAAAUUGUCAACACACUGCGGCCCAUAAAAGCAGCGGCUAUGGGAGAUUCGAACACGAUACGCGGCC
...........(((((((..(((((((((...((((((......(((....))).....).)))))...))))))))).........(((....)))..))))))) ( -37.20)
>DroEre_CAF1 20409 106 + 1
GCGACAAGAACGGCCGCGAAGGCCGUUGCACAUAUGGCAAAAAUUGUCAACACACUGCGGCCCAUAAAAGCAGCGGCUAUGGGAGAUUCGAACACGAUACGCGGCC
...........(((((((..(((((((((...((((((......(((....))).....).)))))...))))))))).........(((....)))..))))))) ( -37.20)
>DroYak_CAF1 18518 106 + 1
GCGACAAGAACGGCCGCGAAGGCCGUUGCACAUAUGGCAAAAAUUGUCAACACACUGCGGCCCAUAAAAGCAGCGGCUAUGGGAGAUUCGAACACGAUACGCGGCC
...........(((((((..(((((((((...((((((......(((....))).....).)))))...))))))))).........(((....)))..))))))) ( -37.20)
>consensus
GCGACAAGAACGGCCGCGAAGGCCGUUGCACAUAUGGCAAAAAUUGUCAACACACUGCGGCCCAUAAAAGCAGCGGCUAUGGGAGAUUCGAACACGAUACGCGGCC
...........(((((((..(((((((((...((((((......(((....))).....).)))))...))))))))).........(((....)))..))))))) (-37.20 = -37.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:06 2006