| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,887,633 – 10,887,727 |
| Length | 94 |
| Max. P | 0.615653 |
| Location | 10,887,633 – 10,887,727 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -25.45 |
| Consensus MFE | -18.47 |
| Energy contribution | -18.50 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10887633 94 - 23771897 GCAACGUGGUGUAAUUAAUGCAGCAGCAGCUGCGCUUUGCCUUCUGCACCACCGCCCCCUUGGGCCG---CCAGCCCC-------CC---GACUGCCCC-UGACCAUC- (((..((((((((......(((((....)))))((...))....)))))))).((((....))))..---........-------..---...)))...-........- ( -28.10) >DroSec_CAF1 19867 94 - 1 GCAACGUGGUGUAAUUAAUGCAGCAGCAGCUGCGCUUUGCCUUCUGCACCACCGCCCCCUUUUGCCG---CCAGCUC--------CG---CACUGCCCCUUGACCAUC- ((...((((((((......(((((....)))))((...))....))))))))...........((..---...))..--------.)---).................- ( -22.20) >DroSim_CAF1 16350 97 - 1 GCAACGUGGUGUAAUUAAUGCAGCAGAAGGUGCGCUUUGCCUUCUGCACCACCGCCCCCUUGCACCACUCCCGGCCC--------CC---CACUGCCCC-UGACCAUCA .....(((((((((.....((.(((((((((.......)))))))))......))....)))))))))....(((..--------..---....)))..-......... ( -29.50) >DroEre_CAF1 18889 100 - 1 GCAACGUGGUGUAAUUAAUGCAGCAGCAGCUGCGUUUUGCCUUCUGCACCACCGCCCUCUUAGGCCC---CCUGCCCCCC-AGCCCC---CACUGCCCC-UGACCAUC- (((..((((((((...((((((((....))))))))........)))))))).(((......)))..---..)))....(-((....---..)))....-........- ( -27.40) >DroYak_CAF1 16944 104 - 1 GCAACGUGGUGUAAUUAAUGCAGCAGCAGCUGCGCUUUGCCUUCUGCACCACCGCCCCCUUAGGCAC---CCUGCCCCCCUAGCCCCCCACACUGCCCC-UGACCAUC- (((..((((((((......(((((....)))))((...))....)))))))).(((......)))..---..)))........................-........- ( -26.10) >DroAna_CAF1 9028 85 - 1 CCACUGUGGUGUAAUUAAUGCAGCAGCAGCUGCGCUUUGCCUUCUGCACCACCGCCCCUUUAACCCUGUCCUUGCC---------AC------CG--------CCACC- .....((((((((......(((((....)))))((...))....))))))))........................---------..------..--------.....- ( -19.40) >consensus GCAACGUGGUGUAAUUAAUGCAGCAGCAGCUGCGCUUUGCCUUCUGCACCACCGCCCCCUUAGGCCC___CCUGCCC________CC___CACUGCCCC_UGACCAUC_ .....((((((((......(((((....)))))((...))....))))))))......................................................... (-18.47 = -18.50 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:05 2006